PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v3112910.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C2H2

Protein Properties

Length: 466aa MW: 51777.8 Da PI: 6.5615

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v3112910.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	114	136	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+++F++ ++ H t+ Lj4g3v3112910.1 114 YECPICKQPFRSEEEVSEHVDTC 136 99**************9999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	5.7E-10	25	52	No hit	No description
SuperFamily	SSF143503	1.11E-17	177	256	IPR018997	PUB domain
CDD	cd09212	1.65E-19	177	261	No hit	No description
Pfam	PF09409	5.8E-17	179	254	IPR018997	PUB domain
SMART	SM00580	1.3E-16	179	246	IPR018997	PUB domain
SuperFamily	SSF54236	6.98E-14	326	439	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	5.7E-10	343	437	No hit	No description
PROSITE profile	PS50033	11.192	355	439	IPR001012	UBX domain
Pfam	PF00789	5.6E-6	357	406	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MGDMKDKVKG FMKKVNNPFT SSSSGKFKGQ GRVLGSSSSS SSSSAPINPN RNPTPRLTPT 60 QNPNPNSKPR PASTTNHEPS PQKTNRNPGD GFDPFDSLVT SSNRSQNGYS LNVYECPICK 120 QPFRSEEEVS EHVDTCLSTP AEGDCEKGVS ELALTEAESQ NSELEVCVGT FLSGNPSEGS 180 LDVVLKLLRN IAREPENVKF RKIRMSNPKI KEAVAEVTGG IELLSFLGFE LREENGDTWA 240 VMEVPTEEQI KVIKKALVLL EPPLVEQPSK RDNLVTSTSA EKDVKAEPKK VDRQVKVFFA 300 VPESVAAKIE LPDSFYKLSA EEVRREAELR RKKLEESQLL IPKSLREKQA KAARRRYTKT 360 IIRIQFPDGV VLQGVFSPWE PTTALYEFVS SALKEQALEF ELMHPVVIKR RVIPHFPKAG 420 ENAKTIEEED LVPSALIKFK PLETDSVVFT GLRNELLEIS EPLVNS

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MGDMKDKVKG FMKKVNNPFT SSSSGKFKGQ GRVLGSSSSS SSSSAPINPN RNPTPRLTPT  60
QNPNPNSKPR PASTTNHEPS PQKTNRNPGD GFDPFDSLVT SSNRSQNGYS LNVYECPICK  120
QPFRSEEEVS EHVDTCLSTP AEGDCEKGVS ELALTEAESQ NSELEVCVGT FLSGNPSEGS  180
LDVVLKLLRN IAREPENVKF RKIRMSNPKI KEAVAEVTGG IELLSFLGFE LREENGDTWA  240
VMEVPTEEQI KVIKKALVLL EPPLVEQPSK RDNLVTSTSA EKDVKAEPKK VDRQVKVFFA  300
VPESVAAKIE LPDSFYKLSA EEVRREAELR RKKLEESQLL IPKSLREKQA KAARRRYTKT  360
IIRIQFPDGV VLQGVFSPWE PTTALYEFVS SALKEQALEF ELMHPVVIKR RVIPHFPKAG  420
ENAKTIEEED LVPSALIKFK PLETDSVVFT GLRNELLEIS EPLVNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifs_A	2e-14	306	439	19	146	Tether containing UBX domain for GLUT4
5ifs_C	2e-14	306	439	19	146	Tether containing UBX domain for GLUT4
5ifw_A	9e-15	310	439	23	146	Tether containing UBX domain for GLUT4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.20106	0.0	floral bud

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v3112910.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004536	0.0	AP004536.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT15N19, TM0097b, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003530725.1	0.0	plant UBX domain-containing protein 2
Refseq	XP_006584861.1	0.0	plant UBX domain-containing protein 2
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	I1KQ73	0.0	I1KQ73_SOYBN; Uncharacterized protein
STRING	GLYMA08G04760.6	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8944	25	29

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]