PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2604280.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 226aa    MW: 25496.7 Da    PI: 6.5069
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2604280.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-17755355
              AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + GVr+++ +g+W+AeI+d      ++ r +lg++ taeeAa+a+++a+  l+g
  Lj4g3v2604280.1  7 FLGVRQRP-SGKWAAEIKDtS----RKIRLWLGTYQTAEEAARAYDEAACFLRG 55
                     67******.7*********33....24************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.53E-31562No hitNo description
SuperFamilySSF541713.4E-19663IPR016177DNA-binding domain
PROSITE profilePS5103219.73663IPR001471AP2/ERF domain
SMARTSM003801.8E-32669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-27663IPR001471AP2/ERF domain
PRINTSPR003675.4E-8718IPR001471AP2/ERF domain
PfamPF008477.7E-13955IPR001471AP2/ERF domain
PRINTSPR003675.4E-82945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MKSKSNFLGV RQRPSGKWAA EIKDTSRKIR LWLGTYQTAE EAARAYDEAA CFLRGSNTRT  60
NFSTHGIAAN SPISLKLRKL LDRKAISNQI RNHNIMINPT FQVADSVAAS PNGIMVMEDN  120
NSACTSGENL SLFTVQNQVS DNPYGLDMNV INCSMSVAPN TSHFDCYWPL PQQRINELPI  180
PKYDLDVERH LSTSVYGMNE CYLEDAYESK YEYDVNYPLS SLLNFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-15662259ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root hairs and leaves. {ECO:0000269|PubMed:17827349}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs). Binds to the GCC box (NF-responsive box) of ENOD11 promoter. May act as transcriptional repressor of NF-responsive box-containing target gene promoters in root hairs. {ECO:0000269|PubMed:17827349}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2604280.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Nod factors in root hairs. {ECO:0000269|PubMed:17827349}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027348718.11e-103ethylene-responsive transcription factor ERN3-like
SwissprotA9Y0K92e-86ERN3_MEDTR; Ethylene-responsive transcription factor ERN3
TrEMBLA0A445JD855e-99A0A445JD85_GLYSO; Ethylene-responsive transcription factor ERN3
STRINGGLYMA08G12130.11e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF156461010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-26related to AP2 11
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]