PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v2367360.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

MYB_related

Protein Properties

Length: 1160aa MW: 129669 Da PI: 10.0279

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v2367360.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.3	2e-09	55	90	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ Wk++a + +R+ +++ Lj4g3v2367360.1 55 QWSKEELERFYEAYRKYGKD-WKKVALAVR-NRSMEMV 90 6***************99.******9.9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.22E-10	52	99	IPR009057	Homeodomain-like
SMART	SM00717	0.0076	52	100	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.5E-5	55	90	IPR009057	Homeodomain-like
Pfam	PF00249	4.3E-8	55	90	IPR001005	SANT/Myb domain
CDD	cd00167	1.21E-6	56	90	No hit	No description
Pfam	PF06584	7.1E-31	625	725	IPR033471	DIRP domain
SMART	SM01135	7.4E-48	625	726	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1160 aa Download sequence Send to blast
MAPSRKSRSV KKKLSNIHEA ASSRDKDAAN VVKTRQKASA GVQKKRKLAD MLWPQWSKEE 60 LERFYEAYRK YGKDWKKVAL AVRNRSMEMV EALYTMNRAY LSLPEGTASV IGLIAMMTDH 120 YSVLGGSDSG KESNEDAGKP KKSQKRLRGK HLNDNKALDG HFSDHSQSHS VASGDDGCLS 180 LLKKRHSGIK PHAVRKRTPR IPISYSIGKD NGEKLFSLAR QGSKQMVDTN DVAHKIALAL 240 TEASQRGGGS SKISGSPNKK NMPSSDLKSG KKHVKSEMAE AKLCSSDMDE RSSELSLGST 300 EGDNGDYSRK TIHRSSRENT RRGRTQEKGI RRYEMNLEPV KNVNKHLSDI KEASSGTDDG 360 KNLNFIKSKF DTDFADAKNA RSCYKGSRKK SKKLLSEKDE SSAFDALNAL ADLSLMMPAT 420 NPDSESSAQV KEGNHDVIDE SKVETRNVFP RLESTASSKL GKNGAAAPEA EAAYQRNVGN 480 RKRKQRPFTS KNDEVHTGSH LSGSPKTKVT DEVKKFVVKG KRSSVSTAHS RQMKPPKNMS 540 SSASDKGERD GSSFSPIKVS STYQVSQVNR VRPIRKMIKP KQMVQSSQQN NFIASLQNNS 600 YSQTGKLINC LSSYQMRRWC TFEWFYSAID YPWFSKREFV EYLDHVGLGH VPRLTRIEWG 660 VIRSSLGRPR RFSRQFLKEE KHKLNQYRES VRSHYAEFFA GTKEVLPPDL AQPLIVGQRI 720 VAVHPKTREI HDGSILTVDH RRCRVQFDQP ELGVEFVMDI DCMPLYPSEN MPTSLIRHGI 780 SPARINENLN ELERNGKVKQ RKIPEHRKFP PRENTDTSKG FYSMHGSSTL SKQGFSSSCK 840 SLAKAACCEI GNAQLESIPQ PSHLEHVHSK EADILAISEL TRALDKKELV LSELKHMNEG 900 VSEDPQYGDK SLRDSEPFKR NYASVLKQLT EANEQVSSAL FCLRQRNTYQ VSSSLLSLKP 960 MANFDDGGQA SSSNCSACHN QESISQSHIA DIVESSRRKA QTMVVQAIQA MSVIRKTESK 1020 VERIEDAINF INNRLSVDDP TASATNFPPR DSVTLASRDQ LTATTLNPLE SYLVQYAELN 1080 SSSDQNEMKI PSELISHCLA TLLMIQKCTE RQFPPADVAQ VLDSAVTSLQ PFCSKNLPVY 1140 SEIQKCMGII RNQILALVPT

Sequence ? help Back to Top

Protein Sequence Length: 1160 aa Download sequence Send to blast

MAPSRKSRSV KKKLSNIHEA ASSRDKDAAN VVKTRQKASA GVQKKRKLAD MLWPQWSKEE  60
LERFYEAYRK YGKDWKKVAL AVRNRSMEMV EALYTMNRAY LSLPEGTASV IGLIAMMTDH  120
YSVLGGSDSG KESNEDAGKP KKSQKRLRGK HLNDNKALDG HFSDHSQSHS VASGDDGCLS  180
LLKKRHSGIK PHAVRKRTPR IPISYSIGKD NGEKLFSLAR QGSKQMVDTN DVAHKIALAL  240
TEASQRGGGS SKISGSPNKK NMPSSDLKSG KKHVKSEMAE AKLCSSDMDE RSSELSLGST  300
EGDNGDYSRK TIHRSSRENT RRGRTQEKGI RRYEMNLEPV KNVNKHLSDI KEASSGTDDG  360
KNLNFIKSKF DTDFADAKNA RSCYKGSRKK SKKLLSEKDE SSAFDALNAL ADLSLMMPAT  420
NPDSESSAQV KEGNHDVIDE SKVETRNVFP RLESTASSKL GKNGAAAPEA EAAYQRNVGN  480
RKRKQRPFTS KNDEVHTGSH LSGSPKTKVT DEVKKFVVKG KRSSVSTAHS RQMKPPKNMS  540
SSASDKGERD GSSFSPIKVS STYQVSQVNR VRPIRKMIKP KQMVQSSQQN NFIASLQNNS  600
YSQTGKLINC LSSYQMRRWC TFEWFYSAID YPWFSKREFV EYLDHVGLGH VPRLTRIEWG  660
VIRSSLGRPR RFSRQFLKEE KHKLNQYRES VRSHYAEFFA GTKEVLPPDL AQPLIVGQRI  720
VAVHPKTREI HDGSILTVDH RRCRVQFDQP ELGVEFVMDI DCMPLYPSEN MPTSLIRHGI  780
SPARINENLN ELERNGKVKQ RKIPEHRKFP PRENTDTSKG FYSMHGSSTL SKQGFSSSCK  840
SLAKAACCEI GNAQLESIPQ PSHLEHVHSK EADILAISEL TRALDKKELV LSELKHMNEG  900
VSEDPQYGDK SLRDSEPFKR NYASVLKQLT EANEQVSSAL FCLRQRNTYQ VSSSLLSLKP  960
MANFDDGGQA SSSNCSACHN QESISQSHIA DIVESSRRKA QTMVVQAIQA MSVIRKTESK  1020
VERIEDAINF INNRLSVDDP TASATNFPPR DSVTLASRDQ LTATTLNPLE SYLVQYAELN  1080
SSSDQNEMKI PSELISHCLA TLLMIQKCTE RQFPPADVAQ VLDSAVTSLQ PFCSKNLPVY  1140
SEIQKCMGII RNQILALVPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	145	PKKSQKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v2367360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146552	7e-84	AC146552.16 Medicago truncatula chromosome 8 clone mth2-9d1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027329952.1	0.0	protein ALWAYS EARLY 3 isoform X1
TrEMBL	A0A445G0T5	0.0	A0A445G0T5_GLYSO; Protein ALWAYS EARLY 3 isoform A
TrEMBL	K7MJL1	0.0	K7MJL1_SOYBN; Uncharacterized protein
STRING	GLYMA17G02741.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding