PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v2249130.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

SBP

Protein Properties

Length: 1023aa MW: 112364 Da PI: 7.6676

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v2249130.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126	1.5e-39	153	229	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv++C+adls+ak+yhrrhkvCe hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrr+k+ Lj4g3v2249130.2 153 VCQVQDCRADLSSAKDYHRRHKVCEGHSKATMALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRRKT 229 6************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.4E-31	150	215	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.761	151	228	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.66E-36	152	231	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.2E-29	154	228	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	6.88E-8	804	921	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.80E-9	805	918	No hit	No description
Gene3D	G3DSA:1.25.40.20	9.1E-7	806	923	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1023 aa Download sequence Send to blast
MEAEFGGKNP FLYGPEMKGV GNGKRSLEWD LNDWKWDGDL FTAQPLNSVP SDCRGGQFFP 60 PAPEFPAKTA NLSSNLSASV NSGEGKRELE KRRRGVTVRG EGEGDEGNDG NGSLNLNLGG 120 QVYPVMVEGE EKIGKKTRVI ETTATATTFN RAVCQVQDCR ADLSSAKDYH RRHKVCEGHS 180 KATMALVGNV MQRFCQQCSR FHVLQEFDEG KRSCRRRLAG HNRRRRRKTH PDAEVNGEAL 240 NDERGSSYLL TSLIRILSNM HSNSSDHTRN IDFLSHLLSN LASLAGIING RSLASILEGS 300 QGLVNAGTPR LEHNVPILNS SGLETSRPSG SSIKTDNDFI HQDPPNSAAH CETLPAYGIG 360 QKCIPLGDGG VRNIKPPSGP HPSNLLLSRD SLPSELIAAQ TTAGRNSLNN IDLNNVYDDA 420 QNGVEKKTHP PVASEIGSTY LPSWLRSDSL KSTPPQTSRN SDSTSTRSPS SSSGEAQSRT 480 DRIVFKLFGK DPSDFPLVLR SQILNWLSHS PTEIESYIRP GCIILTIYLR LEKSTWEELC 540 SNLGLSLKKL IAASNDPFWT TGWVYTRVQH SVAFLYNGQV VLDVPLRLKS PQDCRISCIK 600 PLAVPASASS QFIVKGFNLL RSSTRLLCAL EGTYLVQDSC HDLNDGADVA NAAIQRLSFS 660 CYIPNVSGRG FIEVEDHGLG CCSFPFIVAE QEVCSEICKL ETVIEAGEAT DVIQITNQQS 720 EEKTRALDFI QEMGWLLHRR HVNIRLGPVS PIHDLFCFNR FMWLVDFSMD HGWCAVMKKL 780 LDILFEGGVV DAGEHATIEV ALLDMSLLHS AVKRNCRPMV ELLLKFVPVN TSDGTDSKVK 840 QVDKSLARFL FRPDAVGPGG LTPLHVAASM SGSENVLDAL TDDPGMVGIE AWESARDNTG 900 LTPNDYASLR GHYTYIQLVQ KKTSKKGGRQ CVLDIPGTLV DSYTKQKQSE RHGTSKVSSL 960 QTVKIETTTV PLQCGLCKHK QAYGGMRPAL VYRPVMLSMV TIAAVCVCVA LFFKSLPRVY 1020 MTQ

Sequence ? help Back to Top

Protein Sequence Length: 1023 aa Download sequence Send to blast

MEAEFGGKNP FLYGPEMKGV GNGKRSLEWD LNDWKWDGDL FTAQPLNSVP SDCRGGQFFP  60
PAPEFPAKTA NLSSNLSASV NSGEGKRELE KRRRGVTVRG EGEGDEGNDG NGSLNLNLGG  120
QVYPVMVEGE EKIGKKTRVI ETTATATTFN RAVCQVQDCR ADLSSAKDYH RRHKVCEGHS  180
KATMALVGNV MQRFCQQCSR FHVLQEFDEG KRSCRRRLAG HNRRRRRKTH PDAEVNGEAL  240
NDERGSSYLL TSLIRILSNM HSNSSDHTRN IDFLSHLLSN LASLAGIING RSLASILEGS  300
QGLVNAGTPR LEHNVPILNS SGLETSRPSG SSIKTDNDFI HQDPPNSAAH CETLPAYGIG  360
QKCIPLGDGG VRNIKPPSGP HPSNLLLSRD SLPSELIAAQ TTAGRNSLNN IDLNNVYDDA  420
QNGVEKKTHP PVASEIGSTY LPSWLRSDSL KSTPPQTSRN SDSTSTRSPS SSSGEAQSRT  480
DRIVFKLFGK DPSDFPLVLR SQILNWLSHS PTEIESYIRP GCIILTIYLR LEKSTWEELC  540
SNLGLSLKKL IAASNDPFWT TGWVYTRVQH SVAFLYNGQV VLDVPLRLKS PQDCRISCIK  600
PLAVPASASS QFIVKGFNLL RSSTRLLCAL EGTYLVQDSC HDLNDGADVA NAAIQRLSFS  660
CYIPNVSGRG FIEVEDHGLG CCSFPFIVAE QEVCSEICKL ETVIEAGEAT DVIQITNQQS  720
EEKTRALDFI QEMGWLLHRR HVNIRLGPVS PIHDLFCFNR FMWLVDFSMD HGWCAVMKKL  780
LDILFEGGVV DAGEHATIEV ALLDMSLLHS AVKRNCRPMV ELLLKFVPVN TSDGTDSKVK  840
QVDKSLARFL FRPDAVGPGG LTPLHVAASM SGSENVLDAL TDDPGMVGIE AWESARDNTG  900
LTPNDYASLR GHYTYIQLVQ KKTSKKGGRQ CVLDIPGTLV DSYTKQKQSE RHGTSKVSSL  960
QTVKIETTTV PLQCGLCKHK QAYGGMRPAL VYRPVMLSMV TIAAVCVCVA LFFKSLPRVY  1020
MTQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-28	153	227	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.7619	0.0	floral bud\| flower\| pod\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v2249130.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020226057.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_020226058.1	0.0	squamosa promoter-binding-like protein 1
TrEMBL	A0A445K0J3	0.0	A0A445K0J3_GLYSO; Squamosa promoter-binding-like protein 1 isoform A
STRING	GLYMA07G36180.3	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1