PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v1000010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 213aa MW: 25274.9 Da PI: 10.182 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88 | 5.2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvtfskRrngi+KKA+EL LCda+v++iifs++ k++ey+s Lj4g3v1000010.1 9 KFIENPTNRQVTFSKRRNGIFKKAHELTLLCDAKVSLIIFSKSHKMHEYIS 59 79***********************************************86 PP | |||||||
2 | K-box | 58 | 4e-20 | 78 | 173 | 7 | 99 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGed...LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +l+ ++e++ ++ ++L + +++L+r++R+++Ge+ L++Ls+++L+ Le+++ +s +kiR++K +++++ +++ +kk ++l++ n +L ++ Lj4g3v1000010.1 78 IDLWRDHYEKMLENKKRLTDINNKLRRQIRQRIGEGmnnLDDLSFQQLRTLEDDMVSSTEKIRERKLHVIKTRTDTCRKKVRSLEQMNGNLLQE 171 459*******************************973335678************************************************999 PP K-box 98 le 99 l+ Lj4g3v1000010.1 172 LD 173 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.2E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.16 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.54E-37 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 5.62E-33 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.7E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.4E-15 | 83 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.155 | 85 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MGRGKLEIKF IENPTNRQVT FSKRRNGIFK KAHELTLLCD AKVSLIIFSK SHKMHEYISP 60 GLTTKKVIDQ YQRTLGDIDL WRDHYEKMLE NKKRLTDINN KLRRQIRQRI GEGMNNLDDL 120 SFQQLRTLED DMVSSTEKIR ERKLHVIKTR TDTCRKKVRS LEQMNGNLLQ ELDSRTVALA 180 NGVSNFHAFN EEYNHLNRHQ HVEEFDSYYL RLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-15 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 5e-15 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 5e-15 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 5e-15 | 1 | 71 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed during flower development in stamens, petals and carpels (PubMed:17920788). Expressed in fruits and seeds (PubMed:17920788). {ECO:0000269|PubMed:17920788}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00077 | ChIP-seq | Transfer from AT3G54340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v1000010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020216956.1 | 1e-111 | floral homeotic protein DEFICIENS isoform X1 | ||||
Refseq | XP_020216957.1 | 1e-111 | floral homeotic protein DEFICIENS isoform X2 | ||||
Swissprot | Q003J2 | 4e-82 | TM6_VITVI; Agamous-like MADS-box protein TM6 | ||||
TrEMBL | A0A151TIP0 | 1e-110 | A0A151TIP0_CAJCA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | A0A371EYS1 | 1e-110 | A0A371EYS1_MUCPR; Floral homeotic protein DEFICIENS (Fragment) | ||||
STRING | XP_007157954.1 | 1e-110 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2735 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 7e-62 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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