PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v0473650.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

HB-other

Protein Properties

Length: 428aa MW: 48551.1 Da PI: 8.2387

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v0473650.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.5	1.9e-17	44	99	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ ++ ps+e r eL++klgL +rq ++WF+ rR k+kk Lj4g3v0473650.1 44 PKRQMKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDRQLQMWFCHRRLKDKK 99 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-17	24	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.94E-16	36	102	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.066	40	100	IPR001356	Homeobox domain
SMART	SM00389	6.3E-17	42	104	IPR001356	Homeobox domain
Pfam	PF00046	5.5E-15	44	99	IPR001356	Homeobox domain
CDD	cd00086	1.00E-13	45	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MEGEAGSEGD SNRKRGSADD NSDENRNEGS NSKIANSNDG QGKPKRQMKT PFQLETLEKA 60 YALDKFPSEE VRVELSQKLG LLDRQLQMWF CHRRLKDKKE MALKKQPQKV EVEPLPDSPV 120 DNLRLGPELG NGYASGSGSG SSPFTRLEPR NGVSRGMPGY YESPQAVMER RAIACVEAQL 180 GEPLRDDGPT LGVEFDPLPP GAFGTPIAVT EHQKLPSPSY DSKIYGRHDV RTNKAMAKTF 240 QSRSRPDAFG QFRQSHLHDL MEDPARNPSV APVLEQLPRI HVTQGQSSRV RLSSQQDRQG 300 SSFQSPPLPD DVNPLAELYT NITNGGMNSH FTDHQMVGPE NAYALPSGQL LHDNAVRIDR 360 KRKSDDPRSA KDVEAHEIKI RKELEKQESH RRKNEERMKK EMERQDRERR KEEERLMRER 420 QREEERAK

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MEGEAGSEGD SNRKRGSADD NSDENRNEGS NSKIANSNDG QGKPKRQMKT PFQLETLEKA  60
YALDKFPSEE VRVELSQKLG LLDRQLQMWF CHRRLKDKKE MALKKQPQKV EVEPLPDSPV  120
DNLRLGPELG NGYASGSGSG SSPFTRLEPR NGVSRGMPGY YESPQAVMER RAIACVEAQL  180
GEPLRDDGPT LGVEFDPLPP GAFGTPIAVT EHQKLPSPSY DSKIYGRHDV RTNKAMAKTF  240
QSRSRPDAFG QFRQSHLHDL MEDPARNPSV APVLEQLPRI HVTQGQSSRV RLSSQQDRQG  300
SSFQSPPLPD DVNPLAELYT NITNGGMNSH FTDHQMVGPE NAYALPSGQL LHDNAVRIDR  360
KRKSDDPRSA KDVEAHEIKI RKELEKQESH RRKNEERMKK EMERQDRERR KEEERLMRER  420
QREEERAK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	99	RRLKDKKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v0473650.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006594306.1	1e-179	homeobox-DDT domain protein RLT1 isoform X2
Refseq	XP_028189622.1	1e-179	homeobox-DDT domain protein RLT1-like isoform X2
TrEMBL	A0A0B2PKP8	1e-177	A0A0B2PKP8_GLYSO; Homeobox protein 10
TrEMBL	I1M069	1e-177	I1M069_SOYBN; Uncharacterized protein
STRING	GLYMA13G24370.1	1e-178	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15781	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	1e-60	homeobox-1