PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0473650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HB-other
Protein Properties Length: 428aa    MW: 48551.1 Da    PI: 8.2387
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0473650.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.51.9e-174499257
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      kR+  t+ qle+Le++++ ++ ps+e r eL++klgL +rq ++WF+ rR k+kk
  Lj4g3v0473650.1 44 PKRQMKTPFQLETLEKAYALDKFPSEEVRVELSQKLGLLDRQLQMWFCHRRLKDKK 99
                     69****************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-1724100IPR009057Homeodomain-like
SuperFamilySSF466893.94E-1636102IPR009057Homeodomain-like
PROSITE profilePS5007116.06640100IPR001356Homeobox domain
SMARTSM003896.3E-1742104IPR001356Homeobox domain
PfamPF000465.5E-154499IPR001356Homeobox domain
CDDcd000861.00E-1345101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEGEAGSEGD SNRKRGSADD NSDENRNEGS NSKIANSNDG QGKPKRQMKT PFQLETLEKA  60
YALDKFPSEE VRVELSQKLG LLDRQLQMWF CHRRLKDKKE MALKKQPQKV EVEPLPDSPV  120
DNLRLGPELG NGYASGSGSG SSPFTRLEPR NGVSRGMPGY YESPQAVMER RAIACVEAQL  180
GEPLRDDGPT LGVEFDPLPP GAFGTPIAVT EHQKLPSPSY DSKIYGRHDV RTNKAMAKTF  240
QSRSRPDAFG QFRQSHLHDL MEDPARNPSV APVLEQLPRI HVTQGQSSRV RLSSQQDRQG  300
SSFQSPPLPD DVNPLAELYT NITNGGMNSH FTDHQMVGPE NAYALPSGQL LHDNAVRIDR  360
KRKSDDPRSA KDVEAHEIKI RKELEKQESH RRKNEERMKK EMERQDRERR KEEERLMRER  420
QREEERAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19299RRLKDKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0473650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594306.11e-179homeobox-DDT domain protein RLT1 isoform X2
RefseqXP_028189622.11e-179homeobox-DDT domain protein RLT1-like isoform X2
TrEMBLA0A0B2PKP81e-177A0A0B2PKP8_GLYSO; Homeobox protein 10
TrEMBLI1M0691e-177I1M069_SOYBN; Uncharacterized protein
STRINGGLYMA13G24370.11e-178(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15781611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.11e-60homeobox-1