PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3211110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 402aa    MW: 45741.1 Da    PI: 10.0156
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3211110.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.91.3e-112293991373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL+ cA+avss+d + a+  L+++++++s  gd  qRla++f+ AL+ar+a+ + ++y al++++ts    ++ ++a++++  ++P+ k++
  Lj3g3v3211110.1  29 LRSLLILCAQAVSSDDRATASDSLKQIRQHSSLLGDGSQRLAHCFADALEARMAGIGAQTYTALSSKRTS---AADMVKAYQMYISACPFKKLA 119
                      6899************************************************************999999...99******************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                       + aN++Il+ +++ e++Hi+Df+i +G+QWpaL+  L++Rp gpp+lRiTgv+ p++g   +e+++etg rLa+++++++vpfefn+ +a+++
  Lj3g3v3211110.1 120 IIFANHTILNLAKEVETLHIVDFGIRYGFQWPALIYRLSKRPCGPPKLRITGVELPQPGfrPAERVQETGLRLARYCDRFNVPFEFNA-IAQKW 212
                      **********************************************************9*****************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      e+++le+L++k++E laVn++ + ++llde+v l+s+rd+vL+l+++ +P+++  +  + +++++ F++rf eal +ys+lfd l+++++re++
  Lj3g3v3211110.1 213 ETIKLEDLKIKKNELLAVNCMCRFKNLLDETVVLNSPRDAVLNLIRKANPTIFMQASLNGSYTAPFFVTRFREALFHYSTLFDVLDTNVAREDR 306
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       r + E+e++gre++n++aceg+er+er et++ W  r ++aGF+++pl+++  ++ ++ l+  +   +++ e+ + +++gWk+r +++ S+W
  Lj3g3v3211110.1 307 MRLMFEKEFFGREVMNIIACEGSERVERPETYKLWMVRNTRAGFRQLPLDKHLINKLRSKLKDAYHSDFMLVEDGNFMLQGWKGRIIYASSCW 399
                      *****************************************************************777************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.6573380IPR005202Transcription factor GRAS
PfamPF035144.6E-11029399IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGKKEETNKS GGGKSRAKKQ GDKKGVVDLR SLLILCAQAV SSDDRATASD SLKQIRQHSS  60
LLGDGSQRLA HCFADALEAR MAGIGAQTYT ALSSKRTSAA DMVKAYQMYI SACPFKKLAI  120
IFANHTILNL AKEVETLHIV DFGIRYGFQW PALIYRLSKR PCGPPKLRIT GVELPQPGFR  180
PAERVQETGL RLARYCDRFN VPFEFNAIAQ KWETIKLEDL KIKKNELLAV NCMCRFKNLL  240
DETVVLNSPR DAVLNLIRKA NPTIFMQASL NGSYTAPFFV TRFREALFHY STLFDVLDTN  300
VAREDRMRLM FEKEFFGREV MNIIACEGSE RVERPETYKL WMVRNTRAGF RQLPLDKHLI  360
NKLRSKLKDA YHSDFMLVED GNFMLQGWKG RIIYASSCWV PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-503640126380Protein SCARECROW
5b3h_A2e-503640125379Protein SCARECROW
5b3h_D2e-503640125379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3211110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028192193.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2K3NP870.0A0A2K3NP87_TRIPR; SCARECROW-like protein 14-like
STRINGGLYMA12G06670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]