PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2576350.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 487aa    MW: 56075.9 Da    PI: 9.5807
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2576350.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.61.4e-15248338598
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++ ++ +++ +++p +f+ +h +k+e++    +     +sW+v+++ +++s+++ lt+GWk+F ++n Lk gD +v++ +++++ ++ v + r
  Lj3g3v2576350.1 248 TMHRSYIERNTMSMPGRFVPAHLHKEEGN---AILWVAEKSWDVRFKLNQSSNQFSLTTGWKKFQEENTLKKGDKCVLTQMNSEKLSYSVEIER 338
                      56778889999***********7776664...3334567****************************************777788888877765 PP
2B357.42.6e-183994831097
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      ++  + + +p  f++++  +k    t ++   +gr+W+ +l+y+ k++++ +++GW+eFv++ +LkegD +vF l+++++f l vk+ 
  Lj3g3v2576350.1 399 NTHMNEMKIPLGFIKKYVTDKV---TSVVLRAKGRKWDAQLSYDPKDDSTAFSSGWSEFVRECHLKEGDQCVFDLVDKENFVLEVKAS 483
                      44557799*********66644...5577778********************************************999998888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-102103IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-93105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.4737107IPR003340B3 DNA binding domain
SMARTSM010190.00398107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15238330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-16240333IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.815244340IPR003340B3 DNA binding domain
SMARTSM010193.9E-4244340IPR003340B3 DNA binding domain
CDDcd100172.41E-11248338No hitNo description
PfamPF023621.0E-13249338IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-19386480IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.858390484IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-18391480IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-14393484No hitNo description
SMARTSM010191.9E-12393486IPR003340B3 DNA binding domain
PfamPF023622.1E-16398483IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MSSKAIHFSK RIDECSLQKG VLRMPRRFVS KHWINARISN PVALLLPGER WKVTWKKHGS  60
DVIMFGDHWK EFTEFYSLDV EHSLWFSFRN DSRVRGTQFK VRIHESGLEI KYPGRDQEST  120
DSGEESDTDK STDDDDDDDD ENENENEVHG SSRRQKKREK SPLPFSGSSK KKKNNPKEGH  180
HKSYHRQHAG TESQRVMSEN NTNPKKTGKR GISQAKGGWS EEEPLKDSRI SSADKAVSSS  240
ENVIIRCTMH RSYIERNTMS MPGRFVPAHL HKEEGNAILW VAEKSWDVRF KLNQSSNQFS  300
LTTGWKKFQE ENTLKKGDKC VLTQMNSEKL SYSVEIERAK RASSPHLVQE AEKRKQTRLQ  360
SNLAEGSGRG IAANVLDNDS EFPKMNSKRE NQFTIILKNT HMNEMKIPLG FIKKYVTDKV  420
TSVVLRAKGR KWDAQLSYDP KDDSTAFSSG WSEFVRECHL KEGDQCVFDL VDKENFVLEV  480
KASRCMF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155172KKREKSPLPFSGSSKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2576350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14649515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-12related to vernalization1 1