PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v2170490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C2H2 | ||||||||
Protein Properties | Length: 262aa MW: 28808.1 Da PI: 8.4763 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Lj3g3v2170490.1 83 FSCNYCQRKFYSSQALGGHQNAH 105 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.55E-6 | 80 | 110 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 83 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MNLLKPEPCS SENLNILFSE NEDKKHPLDQ APPPLLLDLS LSNKDSSGDE SKPELNLLNC 60 FHTDLSENSS ESSHENELDP RVFSCNYCQR KFYSSQALGG HQNAHKRERT LARRGYRAGA 120 AASLDFGQRY YPSMASLPSF GLCNKSLGIQ VHSMINKPSY QTPLFGFLHS HGQNGWQRQG 180 LPFDSQPAIG KLTSPRNFHV GAESESPLPG GNPKFGMFST RKVTEGFGGY SLGSGSSSSS 240 SSTTHLKSKQ EKLQKLDLSL KL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v2170490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 5e-69 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027344897.1 | 1e-113 | zinc finger protein 3-like | ||||
TrEMBL | A0A4D6MQP7 | 1e-104 | A0A4D6MQP7_VIGUN; Uncharacterized protein | ||||
STRING | XP_007135804.1 | 1e-103 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25160.1 | 1e-29 | zinc finger protein 3 |