PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2170490.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 262aa    MW: 28808.1 Da    PI: 8.4763
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2170490.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002183105123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C + F ++  L  H++ H
  Lj3g3v2170490.1  83 FSCNYCQRKFYSSQALGGHQNAH 105
                      89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.55E-680110No hitNo description
PROSITE profilePS5015711.42783110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MNLLKPEPCS SENLNILFSE NEDKKHPLDQ APPPLLLDLS LSNKDSSGDE SKPELNLLNC  60
FHTDLSENSS ESSHENELDP RVFSCNYCQR KFYSSQALGG HQNAHKRERT LARRGYRAGA  120
AASLDFGQRY YPSMASLPSF GLCNKSLGIQ VHSMINKPSY QTPLFGFLHS HGQNGWQRQG  180
LPFDSQPAIG KLTSPRNFHV GAESESPLPG GNPKFGMFST RKVTEGFGGY SLGSGSSSSS  240
SSTTHLKSKQ EKLQKLDLSL KL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2170490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150425e-69AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027344897.11e-113zinc finger protein 3-like
TrEMBLA0A4D6MQP71e-104A0A4D6MQP7_VIGUN; Uncharacterized protein
STRINGXP_007135804.11e-103(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.11e-29zinc finger protein 3