PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v1438160.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 380aa    MW: 43072.9 Da    PI: 5.8251
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v1438160.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021242264123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ykC+ C+k+F++   L  H  +H
  Lj3g3v1438160.1 242 YKCETCNKVFRSYQALGGHRASH 264
                      9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.8E-6427IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369426IPR007087Zinc finger, C2H2
SMARTSM003550.091426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139121.8E-11241266IPR007087Zinc finger, C2H2
SuperFamilySSF576676.28E-8241264No hitNo description
PROSITE profilePS5015710.783242269IPR007087Zinc finger, C2H2
SMARTSM003550.012242264IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
SuperFamilySSF576676.28E-8293320No hitNo description
PfamPF139121.7E-10298320IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328298325IPR007087Zinc finger, C2H2
SMARTSM003550.22298320IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280300320IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MEKHKCKLCF RRFSNGRALG GHMRSHMMNL QISKQEEESS RTIQLSFEAE SAPSSSSSEG  60
EEDDKGLSYG LRENPKRSIR LVDPEFSFAA PENGSSILLQ DRESETESSK NNPTRARSKR  120
AWKIGDSDHK NREAVMKKVV KFCETSKTES WVADHEPVSS VSDATTEEDV AFCLMMLSRD  180
KWKRQKKDQK MMDDQYEDED EEQEEDQDDE EDEEAERSME DSEEESQELI KISKNKARKG  240
RYKCETCNKV FRSYQALGGH RASHKKMKMN SKMDHQNQQS QFEGGNCGTS FVVEKKIHEC  300
PVCFRVFASG QALGGHKRTH VTGSSMTMTI PPAPCSSKVG SSFIDLNLPA PVDDDDLSQI  360
ENSAVSDAEF VKLKAKPIRH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v1438160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027335415.11e-167zinc finger protein ZAT9-like
TrEMBLA0A371HN151e-147A0A371HN15_MUCPR; Zinc finger protein ZAT9 (Fragment)
STRINGXP_004494014.11e-139(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-66C2H2-like zinc finger protein