PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v1113540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C2H2 | ||||||||
Protein Properties | Length: 313aa MW: 33787.2 Da PI: 8.5013 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00072 | 126 | 148 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Lj3g3v1113540.1 126 YECKTCNRTFPSFQALGGHRASH 148 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00026 | 213 | 235 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Lj3g3v1113540.1 213 HECSICGAEFTSGQALGGHMRRH 235 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.48E-8 | 125 | 148 | No hit | No description |
Pfam | PF13912 | 2.8E-13 | 125 | 150 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 126 | 148 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.637 | 126 | 153 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 128 | 148 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.48E-8 | 208 | 235 | No hit | No description |
SMART | SM00355 | 0.01 | 213 | 235 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.2E-12 | 213 | 237 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.097 | 213 | 240 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 215 | 235 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MMLSKMDINE GISKSIEELH VTTAKGKRTK RLRPWSPCAV AGAAAVTSSS SSGAADSSST 60 IEGADQEEED MANCLILLAQ GRGEERVIIP HHNKQKEGEM ENHVGDDNKS MMMMTEKTTK 120 IGFYVYECKT CNRTFPSFQA LGGHRASHKK PKATVTQEEK KSPPPPPAPR LTTSTSTRDF 180 EETRQTHVPH RVSLELGVNL HTNKSTNSKS KIHECSICGA EFTSGQALGG HMRRHRAVQA 240 AATVAASTGN NSAAVQIKPR IVLELDLNLP APEDDLRDSA FQIPATATQK SMVLSAAPAL 300 VGCHYSARVG IGF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v1113540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006674 | 0.0 | AP006674.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT30L06, TM0369c, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027342577.1 | 2e-95 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A0S3SGQ2 | 3e-79 | A0A0S3SGQ2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007150141.1 | 8e-79 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 2e-52 | C2H2 family protein |