PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0821290.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 434aa    MW: 49135.6 Da    PI: 6.9002
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0821290.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS398.75.9e-122154302373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL+ecA++v+sg+ ++a+  L+ +s+++spdgd++qR+++yf eAL  r++++ +++ykal++s+ts  +sse + ++k+f+e++P+lkfs+
  Lj3g3v0821290.1  15 ISLLIECAKCVASGSIKNADIGLELISQISSPDGDAVQRMVTYFSEALGYRIVKHLPGVYKALNSSKTS--SSSEDFLVQKYFYELCPFLKFSY 106
                      579************************************************************999998..5999999**************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      l++NqaI+ea+e+e+ vHiiD+  s+++QW++Ll +L +R +gpp+l+iTg+++    +ke l ++   L+  A +l+ p++fn+ ++++led+
  Lj3g3v0821290.1 107 LITNQAIVEAMESENWVHIIDLHCSEPAQWVNLLLTLKNRHGGPPHLKITGIHE----KKEVLDQMSLHLTAEAGNLDFPLQFNP-IVSKLEDV 195
                      ******************************************************....9**************************.7999**** PP

             GRAS 190 eleeLrvkpgEalaVnlvlqlhrll........................................................desvsleserdev 227
                      ++e+L vk+gEala+ +vlqlh+ll                                                             ++ +   +
  Lj3g3v0821290.1 196 DFENLPVKTGEALAITSVLQLHSLLatdddmsgkfspagaasmnlqravhmgqrtfaewlerdminayilspdsalsplsfGA---SP-KMGVF 285
                      ************************************************************************99977533322...22.4777* PP

             GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                      L+++++l+Pk++v++eqe+++n+++++er+ ++l++ysalfd+l++++ r+s er+k+E +llg++i+n++aceg +r+erhe+lekW +rle 
  Lj3g3v0821290.1 286 LNAMRKLQPKLMVITEQESNLNGSNLMERIDRSLYFYSALFDCLDSTVMRTSVERQKLESMLLGEQIKNIIACEGVDRKERHEKLEKWIRRLEL 379
                      ********************************************************************************************** PP

             GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      aGF +vpls++   +ak+ll++++ + y+  ee++ l+++W+drpL+svSaW
  Lj3g3v0821290.1 380 AGFVKVPLSYNGRIEAKSLLQRYGHK-YKFREENDGLLICWSDRPLFSVSAW 430
                      ************************77.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.2341412IPR005202Transcription factor GRAS
PfamPF035142.1E-11915430IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MRELRYDSQG LKNPISLLIE CAKCVASGSI KNADIGLELI SQISSPDGDA VQRMVTYFSE  60
ALGYRIVKHL PGVYKALNSS KTSSSSEDFL VQKYFYELCP FLKFSYLITN QAIVEAMESE  120
NWVHIIDLHC SEPAQWVNLL LTLKNRHGGP PHLKITGIHE KKEVLDQMSL HLTAEAGNLD  180
FPLQFNPIVS KLEDVDFENL PVKTGEALAI TSVLQLHSLL ATDDDMSGKF SPAGAASMNL  240
QRAVHMGQRT FAEWLERDMI NAYILSPDSA LSPLSFGASP KMGVFLNAMR KLQPKLMVIT  300
EQESNLNGSN LMERIDRSLY FYSALFDCLD STVMRTSVER QKLESMLLGE QIKNIIACEG  360
VDRKERHEKL EKWIRRLELA GFVKVPLSYN GRIEAKSLLQ RYGHKYKFRE ENDGLLICWS  420
DRPLFSVSAW SFRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-532043324380Protein SCARECROW
5b3h_D8e-532043324380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0821290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149009.10.0hypothetical protein PHAVU_005G032900g
SwissprotQ9LPR81e-152SCL3_ARATH; Scarecrow-like protein 3
TrEMBLV7BVF70.0V7BVF7_PHAVU; Uncharacterized protein
STRINGXP_007149009.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145191017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-151scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]