PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v0697060.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NF-YC

Protein Properties

Length: 126aa MW: 13528.5 Da PI: 7.4193

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v0697060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	105.9	2.6e-33	22	101	19	97
NF-YC 19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 h+lPlarikki+k + edvkmis e+P+++skace+fi elt rsw+ a + krrtl+k d+a+av td+fdfl+ v Lj3g3v0697060.1 22 HSLPLARIKKIMKkSGEDVKMISGESPIIFSKACEIFIEELTRRSWIMAMQGKRRTLHKDDVASAVIATDVFDFLITLVS 101 99********73579********************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.07E-26	16	96	IPR009072	Histone-fold
Pfam	PF00808	8.0E-20	23	87	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.8E-30	24	100	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MRQAGAYSGL LCGGISGRTG PHSLPLARIK KIMKKSGEDV KMISGESPII FSKACEIFIE 60 ELTRRSWIMA MQGKRRTLHK DDVASAVIAT DVFDFLITLV SDSSAGSPSD DSAASDTTTT 120 QMETSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-31	22	100	16	93	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v0697060.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases at the end of the dark period, peaks in the beginning of the light period and gradually decreases during daytime. {ECO:0000269\|PubMed:26542958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014515050.1	4e-68	nuclear transcription factor Y subunit C-1-like
Refseq	XP_020237975.1	6e-68	nuclear transcription factor Y subunit C-2
Swissprot	A6BLW4	4e-31	NFYC2_ORYSJ; Nuclear transcription factor Y subunit C-2
TrEMBL	A0A151RNI3	1e-66	A0A151RNI3_CAJCA; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A1S3V9U0	1e-66	A0A1S3V9U0_VIGRR; nuclear transcription factor Y subunit C-1-like
STRING	GLYMA13G35980.1	6e-66	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10559	28	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-32	nuclear factor Y, subunit C1

Publications ? help Back to Top
Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]