PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0478050.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 416aa    MW: 45538.4 Da    PI: 7.8964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0478050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-11353398655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri s++ +L+ l P++    +k  s a+ L +++eYIk Lq
  Lj3g3v0478050.1 353 SIAERERRTRISSRIKKLQGLFPQS----DKQTSTADLLDLTTEYIKGLQ 398
                      689*********************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.249347397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-13350409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.63E-10351402No hitNo description
Gene3DG3DSA:4.10.280.105.6E-12352408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9353403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-8353398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MSLVYSHALK YSEGEVRRNQ EMDSNNIGYP QQHCHQQNSG LLRYNSAPSS LLKSLTDEEP  60
FRSEDHNQNY PPSTSSDMES MLAKLISSNS EPLHEVGDNP VKQEINPVSK HNGYSYVSPS  120
QITYQPQQTQ GLPNGSLGAS GNSFDGSLSA VRALAPENYT QNKGGSSNFS SNLIRQKSSP  180
AGFFSNYSVD NGLAALREVG SFGASAVPNG HATTSSSGLH GTFNFSSRTS SCSTRMPQIA  240
ETEHEDLQAN CVERRNIGSD TSNTISYMPS YLWDGSAFNA SKTATNNSEF MFGTTNLMET  300
MDAGFGSQKL LTHHLSLPSS STKMESMDKF LQIQGSVLCK IRAKRGFATH PRSIAERERR  360
TRISSRIKKL QGLFPQSDKQ TSTADLLDLT TEYIKGLQKQ VQILTEAKAK CTCTSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0478050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096690.0AP009669.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT46L11, TM0365, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542860.10.0transcription factor bHLH130 isoform X1
RefseqXP_006594419.10.0transcription factor bHLH130 isoform X1
RefseqXP_028186919.10.0transcription factor bHLH130-like isoform X1
RefseqXP_028186920.10.0transcription factor bHLH130-like isoform X1
TrEMBLA0A0R0H3120.0A0A0R0H312_SOYBN; Uncharacterized protein
TrEMBLA0A445I7I60.0A0A445I7I6_GLYSO; Transcription factor bHLH130 isoform B
STRINGGLYMA13G27455.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-34bHLH family protein