PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v0030630.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 236aa    MW: 26549.6 Da    PI: 8.8105
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v0030630.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.6e-1364110455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR+++ ++f  L  ++P +     kK +Ka++L +A++Y+k+Lq
  Lj3g3v0030630.1  64 DHVMAERKRRQEMAERFIALSAMIPGL-----KKIDKASVLGEAINYVKQLQ 110
                      699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.97760109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1664125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-1065110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.83E-1165114No hitNo description
SuperFamilySSF474593.53E-1665122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-1366115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEAQRGDIIM RQHPETLSSC RTQTQTHHHS MYSSNCLDNL GFKGQNSGPH LGTKRIRSSS  60
EIQDHVMAER KRRQEMAERF IALSAMIPGL KKIDKASVLG EAINYVKQLQ ERIAVLEEEG  120
NKKKKSTTNS LILIKKSQSY PHNSDDSDQV LPEVEAIGLD SESEKELLIR IHCEKRKGIL  180
LKLLALLENV HLSVASSNVL PFGKNTLNIT IIAQMGEEYK LTGEELVKVL REGLLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v0030630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597973.15e-81transcription factor bHLH25
TrEMBLG7IMB41e-79G7IMB4_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES682242e-80(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14964813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-43bHLH family protein