PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

ERF

Protein Properties

Length: 110aa MW: 11881.5 Da PI: 10.5563

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj2g3v3209730.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.2	2.6e-20	27	78	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrdp + ++r++lg+f++aeeAa+a++aa+++l+g+ Lj2g3v3209730.1 27 PRYRGVRERP-WGRFAAEIRDPMK---KARVWLGTFDSAEEAARAYDAAARALRGP 78 68***888.******843...5***********************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.7E-14	27	77	IPR001471	AP2/ERF domain
CDD	cd00018	3.14E-18	27	87	No hit	No description
Gene3D	G3DSA:3.30.730.10	2.1E-33	28	86	IPR001471	AP2/ERF domain
SMART	SM00380	3.3E-36	28	91	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.907	28	85	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.77E-23	28	87	IPR016177	DNA-binding domain
PRINTS	PR00367	3.8E-11	29	40	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.8E-11	51	67	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MKRGRGVAAA AAAMVVEVNG SAVLKEPRYR GVRERPWGRF AAEIRDPMKK ARVWLGTFDS 60 AEEAARAYDA AARALRGPKA KTNFPLSPFC YHHPAAADPF YYAAGNNGGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	6e-22	25	86	2	64	ATERF1
3gcc_A	6e-22	25	86	2	64	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.2196	1e-169	pod\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269\|PubMed:11487705, ECO:0000269\|PubMed:15994908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj2g3v3209730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003544774.1	3e-45	ethylene-responsive transcription factor 3
Refseq	XP_028199668.1	3e-45	ethylene-responsive transcription factor 3
Swissprot	Q9LDE4	2e-37	ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBL	A0A0R4J561	8e-44	A0A0R4J561_SOYBN; Uncharacterized protein
TrEMBL	A0A445H0A1	8e-44	A0A445H0A1_GLYSO; Ethylene-responsive transcription factor 3
TrEMBL	C6TEF7	2e-44	C6TEF7_SOYBN; Uncharacterized protein
STRING	GLYMA14G02360.1	1e-44	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2263	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20310.1	3e-29	ethylene response factor 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Giuntoli B,Perata P Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles. Plant Physiol., 2018. 176(2): p. 1143-1155 [PMID:29269576]