PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v3106100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | B3 | ||||||||
Protein Properties | Length: 76aa MW: 8650.08 Da PI: 10.1114 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.9 | 2.9e-16 | 2 | 74 | 3 | 85 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 +v++p++v+ + l +p fa+++ ++ ++++ l+ ++gr+W+v + + ++ + +GWk+F + n+Lk+gD+++F+l+ Lj2g3v3106100.1 2 TVMKPAYVNGYS-LHIPSFFAKKYLKN---ETDVLLQVLDGRTWSVSF--NLGK----FNAGWKKFTSVNNLKVGDVCLFELN 74 578889999888.***********655...347***************..7777....99*********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 5.21E-13 | 1 | 76 | No hit | No description |
PROSITE profile | PS50863 | 12.252 | 1 | 76 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.0E-5 | 1 | 76 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-16 | 2 | 75 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-15 | 2 | 75 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.7E-14 | 2 | 74 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MTVMKPAYVN GYSLHIPSFF AKKYLKNETD VLLQVLDGRT WSVSFNLGKF NAGWKKFTSV 60 NNLKVGDVCL FELNKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v3106100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004896 | 1e-100 | AP004896.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT16I07, TM0040, complete sequence. | |||
GenBank | AP010309 | 1e-100 | AP010309.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjB01H03, BM1799, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020988168.1 | 2e-22 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A371FM06 | 3e-23 | A0A371FM06_MUCPR; B3 domain-containing transcription factor VRN1 (Fragment) | ||||
STRING | GLYMA09G20150.1 | 8e-20 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14300 | 4 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-11 | B3 family protein |