PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2902380.1
Common NameCM0545.620.nc
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 301aa    MW: 32364.2 Da    PI: 5.27
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2902380.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2384.2e-12115165154
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                      ++ +GVr +k +g+W AeI+  + ++    r +lg++ taeeA +a++  r+++e
  Lj2g3v2902380.1 115 CKLRGVRLRK-SGKWGAEIHStFLKG---GRSWLGTYNTAEEASQAYESTRLEIE 165
                      689******9.7*******9966433...788*******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-8115166IPR001471AP2/ERF domain
CDDcd000182.16E-14115157No hitNo description
PROSITE profilePS5103215.54116177IPR001471AP2/ERF domain
SMARTSM003805.1E-8116179IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-12116163IPR016177DNA-binding domain
PRINTSPR003671.4E-5117128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-15118165IPR001471AP2/ERF domain
PRINTSPR003671.4E-5140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSKFKKQPAS RRLRPQPLPE FKMGRKLLVI YDDPHATESS DDEYQSVPTE KKKLGKIKRC  60
ITEIPLPPLV PVISGSAETS SFAEKRINMS SKNVEGHNKK RVSTQNPSTS RQPSCKLRGV  120
RLRKSGKWGA EIHSTFLKGG RSWLGTYNTA EEASQAYEST RLEIEAMTKA RVPNNGSSDK  180
GPASNSSSAD ATVAEGSASE KPSAEANDMV AELAGLEIPD LSLLNLPPTP PAAAAVVPIG  240
SKPNPVLDID FLADYAGQGF DDDTNLGGGL EDIPIFGVDN NEPSQLLDFN FGDFDSDGFA  300
G
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.39950.0cell culture| floral bud| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2902380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0095660.0AP009566.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT26K22, TM1679.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027365139.13e-80ethylene-responsive transcription factor ERF118-like
TrEMBLB0BLJ10.0B0BLJ1_LOTJA; CM0545.620.nc protein
STRINGXP_007142907.12e-69(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-18ERF family protein