 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Lj2g3v2365800.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
| Family |
WRKY |
| Protein Properties |
Length: 371aa MW: 41583.2 Da PI: 8.4486 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj2g3v2365800.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 106.9 | 1e-33 | 53 | 110 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k
Lj2g3v2365800.1 53 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGTHNHPK 110
8****************************************.***************85 PP
|
| 2 | WRKY | 107.5 | 6.5e-34 | 224 | 282 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
Lj2g3v2365800.1 224 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCPVRKHVERASHDLRAVITTYEGKHNHD 282
59********************************************************7 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009409 | Biological Process | response to cold |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0010120 | Biological Process | camalexin biosynthetic process |
| GO:0010200 | Biological Process | response to chitin |
| GO:0010508 | Biological Process | positive regulation of autophagy |
| GO:0042742 | Biological Process | defense response to bacterium |
| GO:0050832 | Biological Process | defense response to fungus |
| GO:0070370 | Biological Process | cellular heat acclimation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 371 aa
Download sequence Send
to blast |
MMMKTENSSS MQSFSPEIAS VQTNHNNGFQ SDYNNYQPQQ QQLQPQTLNR RSDDGYNWRK 60
YGQKQVKGSE NPRSYYKCTY PNCPTKKKVE RSLDGQITEI VYKGTHNHPK PQATRRNSSS 120
SSSLPIPHSN HISNDIQDQS YATHGSGQMD SVATPENSSI SIGDDDFEQS SQKCRSGGDE 180
LDEDEPDSKR WKVEGENEGI SAPGSRTVRE PRVVVQTTSD IDILDDGYRW RKYGQKVVKG 240
NPNPRSYYKC THPGCPVRKH VERASHDLRA VITTYEGKHN HDVPAARGSG NHSVTRPLPN 300
NTANAIRPSS VTHQHHHNTN NNSLQSLRPQ QAPDQVQSSP FTLEMLQQNQ GGFGFSSGFG 360
NSMGSYNMNN Q
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000269|PubMed:19199048}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in aleurone cells (PubMed:15618416). Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos (PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:26025535}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP004529 | 0.0 | AP004529.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT01K12, TM0058a, complete sequence. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Zhang ZL, et al.
A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
Plant Mol. Biol., 2009. 70(1-2): p. 139-51
[PMID:19199048] - Basu S,Roychoudhury A
Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
Biomed Res Int, 2014. 2014: p. 706890
[PMID:25110688] - Zhang L, et al.
Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
Plant Sci., 2015. 236: p. 214-22
[PMID:26025535]
|
