PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v2000320.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 181aa    MW: 20160.4 Da    PI: 7.0442
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v2000320.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-193080155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr +  +grWv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Lj2g3v2000320.1 30 KKYRGVRMRQ-WGRWVSEIREPKK---KSRIWLGTFPTPEMAAQAHDVAALAIKG 80
                     59*****998.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-323090No hitNo description
SMARTSM003802.7E-383194IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-213190IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-323190IPR001471AP2/ERF domain
PROSITE profilePS5103223.4723188IPR001471AP2/ERF domain
PfamPF008471.1E-123180IPR001471AP2/ERF domain
PRINTSPR003677.5E-103243IPR001471AP2/ERF domain
PRINTSPR003677.5E-105470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEEDTEVQPT STTSSTEEEE VCVENNNKNK KYRGVRMRQW GRWVSEIREP KKKSRIWLGT  60
FPTPEMAAQA HDVAALAIKG PSAFLNFPES ASQLPRPATT SRKDIQAAAA KAATMNYNHR  120
EAQAQAQTSP FMCSSNSSPS WGKSHSGGEL HYSAPWLGAG AEHIDSGFRL ELEDPFPWKC  180
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-162888263ATERF1
3gcc_A1e-162888263ATERF1
5wx9_A6e-1631881472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v2000320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029127773.12e-59ethylene-responsive transcription factor ERF038
SwissprotQ9M0803e-42ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A151TJA84e-58A0A151TJA8_CAJCA; Ethylene-responsive transcription factor ERF034 family
STRINGGLYMA05G04920.12e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.12e-39ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]