PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1985040.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 322aa    MW: 36288.2 Da    PI: 4.9663
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1985040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.58e-5141381128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeel+ +yL++kveg ++el evi+e+d yk++Pw+Lp k  +  ++ +w+fF++rd+ky++g+r+nratk+gyWkatgkd++v
  Lj2g3v1985040.1   4 LPPGFRFHPTDEELLGYYLNRKVEGLEIEL-EVIPEIDFYKFDPWELPdKsFLPRRDLDWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKV 96 
                      79****************************.99**************95433444666************************************ PP

              NAM  93 lsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++        +++g +ktLvfy+grap g +tdWvmheyrl
  Lj2g3v1985040.1  97 VCHpspftsPVTVTGYRKTLVFYRGRAPLGDRTDWVMHEYRL 138
                      **877776555569**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-573158IPR003441NAC domain
PROSITE profilePS5100557.0284158IPR003441NAC domain
PfamPF023651.4E-285138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGGLPPGFRF HPTDEELLGY YLNRKVEGLE IELEVIPEID FYKFDPWELP DKSFLPRRDL  60
DWFFFCPRDR KYPNGSRTNR ATKAGYWKAT GKDRKVVCHP SPFTSPVTVT GYRKTLVFYR  120
GRAPLGDRTD WVMHEYRLCD DPGQGPQGAF ALCRVMKKNE KANEKGKGRA GNNGSTTNGN  180
DTSMRFSNSG DISSLSSPID SPSHMAPVSG FEQASTDTNS SSFWLSPDMI LDSSKEYSQT  240
QDVVGYFSQH DLMNTTTPCQ SFGHAEISPS SSYSNFNGET EFSDALMSPY SGQGIFMDLC  300
VNEDMAYEYY DQINSISDPK QF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-49416417171NO APICAL MERISTEM PROTEIN
1ut4_B1e-49416417171NO APICAL MERISTEM PROTEIN
1ut7_A1e-49416417171NO APICAL MERISTEM PROTEIN
1ut7_B1e-49416417171NO APICAL MERISTEM PROTEIN
4dul_A1e-49416417171NAC domain-containing protein 19
4dul_B1e-49416417171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1985040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0102791e-162AP010279.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT17M11, TM1845a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027361468.11e-179NAC domain-containing protein 71-like isoform X1
SwissprotO496976e-96NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A1S3EF061e-165A0A1S3EF06_CICAR; NAC domain-containing protein 71 isoform X2
STRINGXP_004511780.11e-162(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.15e-92NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]