PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1984620.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 366aa    MW: 40746.8 Da    PI: 5.89
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1984620.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.66.8e-11187232454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h ++ErrRR+++ +++  L  l+P +     kK++Ka++L  A++Y+k L
  Lj2g3v1984620.1 187 DHIIAERRRREKLSQSLIALAALIPGL-----KKMDKASVLGDAIKYVKVL 232
                      6999***********************.....9***************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.811183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-15187246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-8187232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15187249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.33E-11188237No hitNo description
SMARTSM003538.0E-12189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEKLNTPTEA SSSCWLSDLL LQEMDDCNFF QQCNPNLLGD EEFLSHDIVS AFQSDNLQQQ  60
QQPLSSESYS SYPVSNSETV WNSSTDETCF ERPAKQQKTK HVLPDQSNSS SPSSPTSQIL  120
SFENTHLYGL DCSLNPNLQN EGVSVSTPQL RNVNFPAQNR KGSTQNQNFE TITNPQGKGS  180
KKSHGQDHII AERRRREKLS QSLIALAALI PGLKKMDKAS VLGDAIKYVK VLKERLRLLE  240
EQNKNRAMES VVVVNKPQIS NDDNSSSSCD DGTIIGSEEA LPHVEARVSE KDVLLRLHCK  300
KQKGLLLKIL FEIQNLHLFV VNSSVLPFGD SILDITIVAQ MGAEYNLTIN ELVKNLRVAA  360
LRSMSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191196ERRRRE
2192197RRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.62330.0floral bud| flower| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1984620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0102770.0AP010277.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjB71C07, BM2029, complete sequence.
GenBankFJ3797570.0FJ379757.1 Lotus japonicus putative basic helix-loop-helix protein BHLH17 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028245048.11e-125transcription factor bHLH18-like isoform X1
TrEMBLC0JP220.0C0JP22_LOTJA; Putative basic helix-loop-helix protein BHLH17
STRINGGLYMA01G40620.21e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-46bHLH family protein