PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1468080.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 350aa MW: 39253.2 Da PI: 4.5293 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.7e-12 | 199 | 242 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Lj2g3v1468080.2 199 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 242 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.491 | 193 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.46E-15 | 196 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-9 | 199 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-12 | 199 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.47E-4 | 200 | 246 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-14 | 200 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 4.88E-4 | 292 | 333 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MSSKTPAIGL SSYLQRQEEQ REKNRTGMEL SHLSFLEELL APRKDTSCWN ALSTELNEPL 60 PSAWSFDSFD ENQALASLYP PFAAFSTPLD QRFECPYGSD AAAAYPFVGG FTMPELDSSY 120 TRKEESSAPP PLLPQEDNQS LDEEFGFLGS DNNQGLEQIK DSCKIEEQVS EVPMVFNMGM 180 CGEKKAKSKK LEGQPSKNLM AERRRRKRLN DRLSMLRSIV PKISKMDRTS ILGDTIDYMK 240 ELLERIGNLQ EEETEEGKNQ IDLLGISKEQ KPNEAMVRNS PKFDVERKDQ DTRISICCAT 300 KPGLLLSTVN TLEALGLEIH QCVISSFSDF SLQASCSEAA GQRNCMSPEE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 201 | 208 | ERRRRKRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.5395 | 0.0 | floral bud| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1468080.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004576 | 0.0 | AP004576.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT01N11, TM0177, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027362095.1 | 0.0 | transcription factor bHLH93-like isoform X1 | ||||
Swissprot | Q9LSL1 | 5e-74 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A445LXS6 | 0.0 | A0A445LXS6_GLYSO; Transcription factor bHLH93 isoform A | ||||
TrEMBL | I1J4X0 | 0.0 | I1J4X0_SOYBN; BHLH transcription factor | ||||
STRING | GLYMA01G02390.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 3e-76 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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