PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj2g3v1195240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ARF | ||||||||
Protein Properties | Length: 847aa MW: 93969.5 Da PI: 6.0662 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.6 | 4.7e-23 | 128 | 229 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ Lj2g3v1195240.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFI--WN 217 99*****************************8544444..48************************************************..88 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ Lj2g3v1195240.1 218 EKNQLFLGIRRA 229 89999****997 PP | |||||||
2 | Auxin_resp | 117.2 | 1.4e-38 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v++nPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k Lj2g3v1195240.1 254 AAHAAATNSCFTVFFNPRASPSEFVIPLSKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDTVRWPNSHWRSVK 337 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.49E-49 | 112 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-40 | 122 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.24E-21 | 127 | 223 | No hit | No description |
SMART | SM01019 | 7.6E-24 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-21 | 128 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.294 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.2E-34 | 254 | 337 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.2E-8 | 712 | 804 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.37E-6 | 718 | 794 | No hit | No description |
PROSITE profile | PS51745 | 22.727 | 720 | 804 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MKLSTSGLGQ QGQEGGEKKC LNSELWHACA GPLVSLPTAG TRVVYFPQGH SEQVSATTNR 60 EVDGHMPNYP SLPPQLICQL HNVTMHADVE TDEVYAQMTL QPLTPEEQKD TFLPMELGLP 120 SKQPSNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF 180 RHIFRGQPKR HLLTTGWSIF VSAKRLVAGD SVLFIWNEKN QLFLGIRRAN RPQTIMPSSV 240 LSSDSMHIGL LAAAAHAAAT NSCFTVFFNP RASPSEFVIP LSKYVKAVYH TRISVGMRFR 300 MLFETEESSV RRYMGTITGI SDLDTVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL 360 TTFPMYPSLF PLRLKRPWHP GTTSLQDGRD EATSGLMWLR GGPVDQGFNS LNFQGAAGML 420 PWMQQRLDPT LLGNDQNQQY QAMLAAGLQD PGSGYLMRPQ MMNFQQPFNY LQQPGNGNSP 480 LQLQQQQQHA IQQSVSSNML QPQAQVLTEN LSQNLLQKPH NSQQVQAQQQ QQQHTYRDTL 540 LIQSDQLNQR QVPSPSYSKP DFLDSSSKFS TSVPPGQNLL SSLCSEGSGG LLNLSRSGQS 600 LITDQLPQQS WTPKYPPMQV NSFSSTMSHS PYSGKDSAMG PPHCNSDTQN STLFGVNIDS 660 SGLLLPTTVP GYTTSSADTD ASTMPLLGDS GFQGSLYACM QDSSELLQSA GQDDPQNQSQ 720 TFVKVYKSGS VGRSLDISRF SSYHELREEL TRMFGIEGKL EDPLRSGWQL VFVDRESDVL 780 LLGDDPWESF VNNVWYIKIL SPEDIQKMGE DQALESIAPS SGQRLNGSVA ESHLIVSGPP 840 SIGSLEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-159 | 11 | 358 | 41 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 of flower development. Highly expressed in petals at stages 9-10, decreases at stage 11 and disappears after flower stage 12. In anthers, expressed at stage 11 in the tapetum, disappears early in stage 12 when the tapetum degrades and reappears throughout the anther late in stage 12 to persist at least until stage 13. In stamen filaments, expressed at stages 12 to 13, especially near the apical end of the filament. Expressed throughout the gynoecium at early stages up to stage 12, especially strongly in ovules. Expression in gynoecium decreases late in stage 12, but persists through stage 13, especially near the apical end including the style. Expressed in the mesocarp of the fruit and the carpel septum during fruit growth. {ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj2g3v1195240.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006591281.1 | 0.0 | auxin response factor 8 | ||||
Refseq | XP_014619664.1 | 0.0 | auxin response factor 8 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A371HRA9 | 0.0 | A0A371HRA9_MUCPR; Auxin response factor (Fragment) | ||||
STRING | GLYMA11G31940.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4958 | 28 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |