PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1172460.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 302aa    MW: 33682.9 Da    PI: 5.8753
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1172460.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-14152198354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Lj2g3v1172460.1 152 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 198
                      79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.136149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11152198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-15153207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-15153205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-5162201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKKEEDQGQC SSQAINNNIQ SYHQEQLLFQ QQMQQQQNFD NIFGGGRGLN MFPEVPWSMN  60
PVHSFNPVRD HEPSSFIVPP PPSPYAGFFN RRVPSLQFAY EGPSSDHHLR IISDALVGPM  120
VQTGSVPYGL QAELGKMTAQ EIMEAKALAA SKSHSEAERR RRERINNHLA KLRSLLPNTT  180
KTDKASLLAE VIQHVKELKR QTSLIAETSP VPTEADELTV DAADEDGRFV IKASLCCEDR  240
SDLLPDLIKA LKALRLRTLR AEISTLGGRV KNVLFITGDD QDSSGEDQSQ QQYCISSIQE  300
AL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1172460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105080.0AP010508.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT28N02, TM1615, complete sequence.
GenBankFJ3797660.0FJ379766.1 Lotus japonicus putative basic helix-loop-helix protein BHLH25 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520421.11e-151transcription factor bHLH30
RefseqXP_022631708.11e-151transcription factor bHLH30
SwissprotQ9S7Y12e-98BH030_ARATH; Transcription factor bHLH30
TrEMBLC0JP310.0C0JP31_LOTJA; Putative basic helix-loop-helix protein BHLH25
STRINGXP_007153337.11e-141(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-77bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]