PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4954920.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 375aa    MW: 41961.3 Da    PI: 6.6268
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4954920.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12171222155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+++P++   + ++ + a+i   A++++k+L+
  Lj1g3v4954920.1 171 QRMTHIAVERNRRKQLNEYLSVLRSIMPES---YVPRGDQASIIGGAINFVKELE 222
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.11E-12169226No hitNo description
Gene3DG3DSA:4.10.280.106.4E-13169226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.716170221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-15170233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-10171222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-8176227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MPFIYKLKST EVNTTSTWLF KYSSSSSFAA SKSCACVRKV RAMALEAVVY PQPQDPFGYG  60
IKDHNLLADV ELSNWGYEDF NLNLENEQQQ GGSISICSFL ENQTENYPCV DWSPQSMEVE  120
LPHKNEQNMS NPSSDASNCN THNLDSSTST PSPPKRRRAR SRKNKEEIEN QRMTHIAVER  180
NRRKQLNEYL SVLRSIMPES YVPRGDQASI IGGAINFVKE LEQKLQFLGV QKEKEGKSDV  240
MAIANANSNK PFSEFFTFPQ YSTSGGSGCE TSTGKGEQLS AVQSGIADIE VIMVESHANL  300
KIRSKKFPKQ LLKMVSSLHG MRLTILHLNV TTTGEIVLYS ISVKVEDDCK LGSVDEIAAA  360
IYQMLDRIQQ ESNLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171182RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4954920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027352983.11e-170transcription factor bHLH94-like
TrEMBLA0A0R0F2U21e-161A0A0R0F2U2_SOYBN; Uncharacterized protein
STRINGGLYMA19G42520.11e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-77bHLH family protein