PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4697600.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 549aa    MW: 62535.5 Da    PI: 6.8663
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4697600.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.78.5e-30103188187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Lj1g3v4697600.1 103 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 188
                      8*************************************999*****************************98..55667*******85 PP
2trihelix46.41.1e-14390473283
         trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                      W+++e+  L ++++eme r+r+ g+ ++  Wee++ km+  g+er+p + kekwe++++  ++i++  +++ ++e+s++c yfd
  Lj1g3v4697600.1 390 WPESEITRLGQLKTEMEARIREsGCPEEVMWEEIATKMACFGYERTPLMFKEKWESMSNCARNIAKDIGNKkRKENSRSCFYFD 473
                      *********************8579*************************************9977665553799999****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.10896161IPR017877Myb-like domain
CDDcd122031.64E-19103168No hitNo description
PfamPF138372.9E-20103189No hitNo description
PROSITE profilePS500905.796382447IPR017877Myb-like domain
PfamPF138372.3E-9388474No hitNo description
CDDcd122036.09E-14390448No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MIIKIITTHP HPPRGGPPPA APRNQPPAAA AAAHHHYEMM MFGRDIMPRC LHDFASTDSA  60
AVAAAAAINT NMTSATPATT NSASTPPLSG LEAEAAVDAS TGRWPRQETL TLLEIRSRLD  120
PKFKEANQKG PLWDEVSRIM SEEHGYQRSG KKCREKFENL YKYYKKTKEG KAGRQDGKHY  180
RFFRQLEALY GENSNNTASL PETNFGGTTV RFQTSNNHTL SQTNQDMFHS HQKHCDSLSL  240
TNSTDFDSTS SEDNDDHSNV GLKDNDSMEK RRKRRSWKVK IKDFIDSQMR KLVEKQEEWL  300
EKLTNTLEQK EKERVLREEE WRRQEGERLE TEHKFWAKER AWIEARDAAL MEALQKLTGN  360
EVVIKTQSHH EGIMGTGIIQ NQNNEDAESW PESEITRLGQ LKTEMEARIR ESGCPEEVMW  420
EEIATKMACF GYERTPLMFK EKWESMSNCA RNIAKDIGNK KRKENSRSCF YFDNNNDHQS  480
SLYNQGGAFC DVNDQRQGTG RLQTNDGSSP SNSNVGNVVG AESCFPFLMS EGGNLWENYS  540
LKMNKANQN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4697600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020213533.10.0trihelix transcription factor PTL
TrEMBLA0A371FXJ20.0A0A371FXJ2_MUCPR; Trihelix transcription factor PTL
STRINGGLYMA19G37660.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-121Trihelix family protein