PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2952280.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family AP2
Protein Properties Length: 297aa    MW: 33483.2 Da    PI: 5.24
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2952280.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.6e-1778129155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa a++ a+ +++g
  Lj1g3v2952280.1  78 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEYRG 129
                      89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.194143IPR001471AP2/ERF domain
SMARTSM003802.6E-6249IPR001471AP2/ERF domain
CDDcd000187.25E-12345No hitNo description
SuperFamilySSF541711.31E-9845IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-9944IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-1778139IPR016177DNA-binding domain
PfamPF008474.4E-1378129IPR001471AP2/ERF domain
CDDcd000183.95E-2478139No hitNo description
PROSITE profilePS5103218.26879137IPR001471AP2/ERF domain
SMARTSM003806.2E-2579143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-1879138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGWICKLGHT VYLGAYDEEE SAARAYDLAA LKYWGTSTFT NFPISDYEKE IQIMQTMTKE  60
EYLATLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY GTQEEAAHAY  120
DIAAIEYRGI HAVTNFDLST YIKWLKPETG STPEAKLHPQ ALPESQTVAS PSNSSLIEES  180
KSLTLHNSFF SPDYLNSLEK QEAFESQSFQ FSSNKSSSPT ALGLLLRSSL FRELVEKNSN  240
VSENETDGEV TKEQQIQIAS DDELGGIFYD GIGGIPFIFA PNRFNSELQE RELNSIF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2952280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027351406.11e-171AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A371EJ161e-173A0A371EJ16_MUCPR; Ethylene-responsive transcription factor WRI1 (Fragment)
STRINGGLYMA09G37540.21e-169(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-68AP2 family protein