PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v1502590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NF-YC | ||||||||
Protein Properties | Length: 197aa MW: 22082.3 Da PI: 6.2365 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.2 | 3.7e-56 | 44 | 148 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdf Lj1g3v1502590.1 44 QLQMFWTYQrqeIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDF 137 89*****998899********************************************************************************* PP NF-YC 92 lvdivprdelk 102 lvdivprde+k Lj1g3v1502590.1 138 LVDIVPRDEIK 148 ********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.86E-34 | 32 | 138 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-20 | 66 | 129 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.8E-37 | 67 | 144 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048586 | Biological Process | regulation of long-day photoperiodism, flowering | ||||
GO:0051247 | Biological Process | positive regulation of protein metabolic process | ||||
GO:2000905 | Biological Process | negative regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MDNNHQAQSA PSYPPTGTPP PPPPPPNAAP PAPFHHLLQQ QQQQLQMFWT YQRQEIEHVN 60 DFKNHQLPLA RIKKIMKADE DVRMISAEAP ILFAKACELF ILELTIRSWL HAEENKRRTL 120 QKNDIAAAIT RTDIFDFLVD IVPRDEIKEE ASLVAAAASG VPYYYPPMGQ PAGMMIGRPA 180 MDPATGVYVQ PPSQALL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-54 | 52 | 144 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 122 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.6214 | 0.0 | floral bud| protoplast |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v1502590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT137846 | 0.0 | BT137846.1 Lotus japonicus clone JCVI-FLLj-7B21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004501704.1 | 1e-105 | nuclear transcription factor Y subunit C-1-like | ||||
Refseq | XP_004501705.1 | 1e-105 | nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9FMV5 | 3e-98 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | I3SBJ9 | 1e-113 | I3SBJ9_LOTJA; Uncharacterized protein | ||||
STRING | XP_004501704.1 | 1e-105 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11071 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 8e-99 | nuclear factor Y, subunit C4 |