PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0360389.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 618aa MW: 68344.6 Da PI: 6.9534 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.9 | 5.5e-21 | 124 | 179 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k Lj0g3v0360389.1 124 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 179 688999***********************************************999 PP | |||||||
2 | START | 200.3 | 8e-63 | 321 | 545 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 ela++a++el+k+a+ +ep+W++ + e++n +e++++f++ + + +ea+r++g+v+ ++ lve+l+d + +W e+++ + +t Lj0g3v0360389.1 321 ELALAAMDELMKMAQTGEPLWMRNVevgrEILNHEEYMRTFTPCIGirpngFVSEASRETGMVIINSLALVETLMDAN-RWAEMFPcmiaRTAT 413 5899**************************************99989*******************************.*************** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168 ev+ssg galqlm el +lsplvp R++ f+R+++q+++g+w++vd S+d ++ + +s+ +++lpSg+++++++ng+skvtwve Lj0g3v0360389.1 414 NEVVSSGingtrnGALQLMHGELHVLSPLVPvREVNFLRFCKQHREGVWAVVDLSIDTIREGSGVPSFGNCRRLPSGCVVQDMPNGYSKVTWVE 507 **************************************************************99****************************** PP -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 h++++++++h+l+r+l++sg+ +ga++w atlqrqce+ Lj0g3v0360389.1 508 HAEYDESQVHQLYRPLLSSGMGFGAQRWIATLQRQCEC 545 ************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.42E-21 | 104 | 181 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 109 | 181 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.362 | 121 | 181 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-17 | 122 | 185 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.5E-18 | 124 | 179 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.15E-17 | 124 | 181 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 156 | 179 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.319 | 312 | 548 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.61E-31 | 314 | 545 | No hit | No description |
CDD | cd08875 | 2.25E-125 | 316 | 544 | No hit | No description |
SMART | SM00234 | 1.7E-45 | 321 | 545 | IPR002913 | START domain |
Pfam | PF01852 | 1.1E-54 | 321 | 545 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence Send to blast |
MSFGGFLDSN NSGGGGGGGR NIAADVPYSN GNTTNDRMAF GAISQPRLVT TTPSLAKPMF 60 TSPGLSLALQ QSNIDGQEDV NRMCEPNGLK RSREEEQSRS GSDNMDGGAS CDEQDAADNP 120 PNKKKRYHRH TPQQIQELEA LFKECPHPDE KQRLELSRRL CLETRQVKFW FQNRRTQMKT 180 QLERHENTLL RQENDKLRGE NMSIRDAMRN PICSNCGGPA MIGEISIEEQ HLRIENARLK 240 DELDRVCALA GKFLGRPISS LPNSSLELGV GGNNGFGGMN TMPDFGMANS LAMVSPSIRP 300 SPTGVTSGFV DRSIERSMIV ELALAAMDEL MKMAQTGEPL WMRNVEVGRE ILNHEEYMRT 360 FTPCIGIRPN GFVSEASRET GMVIINSLAL VETLMDANRW AEMFPCMIAR TATNEVVSSG 420 INGTRNGALQ LMHGELHVLS PLVPVREVNF LRFCKQHREG VWAVVDLSID TIREGSGVPS 480 FGNCRRLPSG CVVQDMPNGY SKVTWVEHAE YDESQVHQLY RPLLSSGMGF GAQRWIATLQ 540 RQCECLAILM SSAPPSIRDH SAPITAGGKR SMLKLAQRMT NNFCAGVCAS TVHKWNKLNP 600 GNVEENVRVM TRQSIDDP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.10106 | 0.0 | pod |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0360389.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027334620.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A1S3VDP6 | 0.0 | A0A1S3VDP6_VIGRR; homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
STRING | XP_007134961.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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