PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0356309.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 178aa MW: 20211.9 Da PI: 10.7141 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2e-18 | 125 | 171 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l+++vkq+G + W+ Ia+++ gR +kqc++rw+++l Lj0g3v0356309.1 125 KGQWTDEEDRKLLKLVKQHGVRKWSQIAEKLE-GRAGKQCRERWHNHL 171 799*****************************.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 29.409 | 120 | 175 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-24 | 124 | 174 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-17 | 124 | 173 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.38E-19 | 125 | 177 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.12E-16 | 128 | 171 | No hit | No description |
Pfam | PF13921 | 3.3E-17 | 128 | 176 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MKSIGGRGGG TASPSSMHRS GPPLTAIDRF LWGQNSHFTP KQQSQNIANN NHTAIANLDD 60 EFSTYRFMWP YPQEVSFIDK LLVNEEAMNW TQQIPTLKEN VQVLGKNSKG VGRRPKKGSS 120 VALIKGQWTD EEDRKLLKLV KQHGVRKWSQ IAEKLEGRAG KQCRERWHNH LRPDIKVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-19 | 123 | 176 | 5 | 58 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0356309.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027337468.1 | 3e-74 | transcription factor MYB119-like | ||||
TrEMBL | A0A371EXC9 | 3e-70 | A0A371EXC9_MUCPR; Transcription factor MYB119 (Fragment) | ||||
TrEMBL | A0A396IPF0 | 3e-73 | A0A396IPF0_MEDTR; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004500264.1 | 6e-65 | (Cicer arietinum) | ||||
STRING | XP_007146726.1 | 1e-64 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4129 | 31 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 1e-33 | myb domain protein 119 |