PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0299319.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 332aa    MW: 38029.6 Da    PI: 4.413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0299319.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11169212654
                      HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Lj0g3v0299319.1 169 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTAILGDTIDYMKEL 212
                      589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.18163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-15166224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-11169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9169212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-4170216No hitNo description
Gene3DG3DSA:4.10.280.101.5E-15170224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.56E-5258299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MELYDHDFLE EELLALQKET RSNTNPSSEK NQLFSNDWSF DHCYDQNSYS FLPNHSSLCQ  60
QVPQSYYNNS SSYTFNEIYS SLLDEFSAPQ IMDSSSYNTL LETPLNTQPF LAQEDYPLSV  120
MEDEDLDLET TCKMEPNQSP EAIPVFNTGT CLEIKNRAKK LEGQPSKNLM AERRRRKRLN  180
DRLSMLRSIV PKISKMDRTA ILGDTIDYMK ELLEKINNLK QEVEVDSDMT NIFKDAKPNE  240
ILVRNSPKFD VDRRNINTRV EICCAGKPGL LLSTVNTLEA LGLDIQQCVI SSFNDFTMQA  300
SCSEEFEQKT ILSSEDIKQA LFRNAGYGGQ CL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171178ERRRRKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.178760.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Broadly expressed. {ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0299319.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1387450.0BT138745.1 Lotus japonicus clone JCVI-FLLj-19J17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544841.11e-178transcription factor bHLH61
RefseqXP_028199138.11e-178transcription factor bHLH61-like
SwissprotQ9LSL11e-80BH093_ARATH; Transcription factor bHLH93
TrEMBLI3SE480.0I3SE48_LOTJA; Uncharacterized protein
STRINGGLYMA14G36370.11e-178(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-82beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]