PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0297209.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NAC | ||||||||
Protein Properties | Length: 193aa MW: 22178.1 Da PI: 8.7121 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.1 | 2.1e-33 | 50 | 191 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....... 79 lp+G++F+Ptd+e++ e+L++kv+++ ++l+ +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ Lj0g3v0297209.1 50 LPAGVKFDPTDHEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHsddedgg 141 799***********9.99*****99984443333333222333336**********.555555677******************8444555544 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk++++++ + el+g kk+Lv+y g+++k+ekt+Wvmh+y+l Lj0g3v0297209.1 142 ETRWHKTGKTRPIYN-NAELKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 191 778************.999***********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-33 | 45 | 192 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.823 | 50 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-15 | 51 | 191 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MTQCSDDPEI NNNIIIQEGR KDSLIRTCPT CGHHIKCQDQ GGGIHDLPGL PAGVKFDPTD 60 HEILEHLEAK VRSDIHKLHP LIDEFIPTLE GENGICYTHP EKLPGVSKDG LIRHFFHRPS 120 KAYTTGTRKR RKVHSDDEDG GETRWHKTGK TRPIYNNAEL KGYKKILVLY TNYGKQRKPE 180 KTNWVMHQYH LRS |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0297209.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235102 | 2e-83 | AC235102.1 Glycine max strain Williams 82 clone GM_WBa0006K18, complete sequence. | |||
GenBank | AC235165 | 2e-83 | AC235165.1 Glycine max strain Williams 82 clone GM_WBa0104E24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540939.1 | 1e-128 | NAC domain-containing protein 73 | ||||
Refseq | XP_028192958.1 | 1e-128 | NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 7e-98 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A0B2SSP2 | 1e-126 | A0A0B2SSP2_GLYSO; NAC domain-containing protein 73 | ||||
TrEMBL | I1LS80 | 1e-126 | I1LS80_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G13710.1 | 1e-127 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-100 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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