PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0209889.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 198aa    MW: 21111.4 Da    PI: 4.4022
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0209889.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-182170255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Lj0g3v0209889.1 21 KYRGVRRRS-SGKWVSEIREPK----KpNRIWLGTFPTPEMAAIAYDVAALALKG 70
                     8*****888.8*********94....468***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-202180IPR016177DNA-binding domain
PfamPF008472.6E-112170IPR001471AP2/ERF domain
PROSITE profilePS5103223.1032178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-302179IPR001471AP2/ERF domain
CDDcd000181.43E-322180No hitNo description
SMARTSM003807.8E-362184IPR001471AP2/ERF domain
PRINTSPR003675.5E-112233IPR001471AP2/ERF domain
PRINTSPR003675.5E-116080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MPSNNGCASS SGSSSKGGGL KYRGVRRRSS GKWVSEIREP KKPNRIWLGT FPTPEMAAIA  60
YDVAALALKG KDAELNFPNS VSSLPVPASS SARDIQMAAA GAAAALGAAK DALKGSEGNN  120
NVSVEQQEVV SVGNNNNDNY EFVDEDLIFD MPNVLVNMAE GMLLSPPRFD FASADDYASS  180
ENYMGSEDPN LWSYPYFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-151983368ATERF1
3gcc_A1e-151983368ATERF1
5wx9_A2e-1521791473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0209889.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019425202.16e-82PREDICTED: ethylene-responsive transcription factor ERF024
SwissprotQ9SJR05e-53ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A396H5S46e-83A0A396H5S4_MEDTR; Putative transcription factor AP2-EREBP family
STRINGGLYMA19G37670.12e-79(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-32ERF family protein