PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0187859.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NAC

Protein Properties

Length: 259aa MW: 29187.7 Da PI: 6.9471

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0187859.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.9	1.1e-32	2	73	57	129
NAM 57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ewyfFs+rd+ky++g+r+nrat+sgyWkatgk ++v s ++++vg+kktLv+y+grap+g++t+Wvmheyrle Lj0g3v0187859.1 2 EWYFFSPRDRKYPNGSRTNRATNSGYWKATGKPRKVNS-QDRAVGMKKTLVYYRGRAPHGSRTNWVMHEYRLE 73 8***********************************.8999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.158	1	95	IPR003441	NAC domain
SuperFamily	SSF101941	3.4E-38	2	95	IPR003441	NAC domain
Pfam	PF02365	2.7E-16	3	72	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MEWYFFSPRD RKYPNGSRTN RATNSGYWKA TGKPRKVNSQ DRAVGMKKTL VYYRGRAPHG 60 SRTNWVMHEY RLEERECETP SGLQDAYALC RVIKKSEVIA PKVGGYCANM TSHAHQITSD 120 QSSSIELYSE GRGEDLDSSN YLMPIDTFSP HNMANESSLN INSGTPFSSE DSLFSLPTSS 180 FPNFGAITYP PSKVDIALEC ARMQHRFTLP PLQVENFPQV GIPEMQMTQT SGAMQRTETD 240 ILQEILSVAH ASQDLMNHQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-34	2	95	72	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-34	2	95	72	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-34	2	95	72	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-34	2	95	72	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-34	2	95	75	168	NAC domain-containing protein 19
3swm_B	1e-34	2	95	75	168	NAC domain-containing protein 19
3swm_C	1e-34	2	95	75	168	NAC domain-containing protein 19
3swm_D	1e-34	2	95	75	168	NAC domain-containing protein 19
3swp_A	1e-34	2	95	75	168	NAC domain-containing protein 19
3swp_B	1e-34	2	95	75	168	NAC domain-containing protein 19
3swp_C	1e-34	2	95	75	168	NAC domain-containing protein 19
3swp_D	1e-34	2	95	75	168	NAC domain-containing protein 19
4dul_A	1e-34	2	95	72	165	NAC domain-containing protein 19
4dul_B	1e-34	2	95	72	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0187859.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020234131.1	1e-148	NAC domain-containing protein 86
Swissprot	A4VCM0	4e-56	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A445LT50	1e-142	A0A445LT50_GLYSO; NAC domain-containing protein 86
STRING	GLYMA02G40750.1	1e-142	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4421	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	2e-78	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]