PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0185399.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 280aa    MW: 31755.1 Da    PI: 4.3929
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0185399.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.73.4e-1421112187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      +W+++   +L++a  ++  +l+rg+l++++W++v++++     + ++  r+ +qCk++++ ++k+yk +k++ ++ +  +ss++p++++l+a
  Lj0g3v0185399.1  21 CWSEEASSTLVDAWGSRYLELNRGNLRQKDWQDVADAVnalhgHTKKTFRTDVQCKNRIDTIKKKYKIEKARVSSSNGVVSSSWPFYERLDA 112
                      7*************************************99999889999**************************99999*********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.3E-2519113No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MPDFHDSLTP PSRPTPVRED CWSEEASSTL VDAWGSRYLE LNRGNLRQKD WQDVADAVNA  60
LHGHTKKTFR TDVQCKNRID TIKKKYKIEK ARVSSSNGVV SSSWPFYERL DALIGPNFNP  120
KKSSSSPSPS PPIALPLLPH RKNSSPFPVI ATPPTAVAAA AAAAEADEDD DEDEDDEEDM  180
EVEVEVEEEE EEDEDDGRGS EVEEAEGEGL SRLAKAIERF GEVYERMEEQ KVKQMVDLEK  240
QRMQFTKDLE LQRMQMFMDT QVQLERIKRG KRSGSNDMYS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.66380.0cell culture| flower| pod| protoplast
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0185399.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150386e-72AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462559.11e-133trihelix transcription factor ASIL2
TrEMBLA0A072VEJ21e-132A0A072VEJ2_MEDTR; Putative transcription factor Trihelix family
STRINGGLYMA13G30280.11e-131(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.16e-38sequence-specific DNA binding transcription factors