PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0151469.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | AP2 | ||||||||
Protein Properties | Length: 253aa MW: 28851 Da PI: 9.9304 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.4 | 1.5e-12 | 49 | 105 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ ++ Aa+a++ a++k++g Lj0g3v0151469.1 49 SVYRGVTRHRWTGRYEAHLWDkNCWNEsQSKKGRQGAYDDEDAAARAYDLAALKYWG 105 78*******************99998888888888*****99*************98 PP | |||||||
2 | AP2 | 52 | 1.8e-16 | 148 | 199 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Lj0g3v0151469.1 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 199 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-8 | 49 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-15 | 49 | 115 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.742 | 50 | 113 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-19 | 50 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.5E-13 | 50 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-6 | 51 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.64E-23 | 148 | 209 | No hit | No description |
Pfam | PF00847 | 3.3E-12 | 148 | 199 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-18 | 148 | 209 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-24 | 149 | 213 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.334 | 149 | 207 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.3E-18 | 149 | 208 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-6 | 189 | 209 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0040008 | Biological Process | regulation of growth | ||||
GO:0045723 | Biological Process | positive regulation of fatty acid biosynthetic process | ||||
GO:1901959 | Biological Process | positive regulation of cutin biosynthetic process | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MAKKKGLKNT STSNAIATAT NTATTTTTTK MKKRSRKSTP RDTPSQRSSV YRGVTRHRWT 60 GRYEAHLWDK NCWNESQSKK GRQGAYDDED AAARAYDLAA LKYWGQDTIL NFPLSNYQDE 120 LKEMENQSKE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY 180 ATQEEAATAY DMAAIEYRGL NAVTNFDLSR YIKWLHPKTQ DQDNDEIATK NPEPNDIPNS 240 ELELGLVSHQ IGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0151469.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019458993.1 | 1e-134 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 1e-100 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A1J7HQK8 | 1e-135 | A0A1J7HQK8_LUPAN; Uncharacterized protein | ||||
STRING | Gorai.009G008800.1 | 1e-129 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 3e-86 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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