PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0130119.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 304aa    MW: 35159.2 Da    PI: 8.2217
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0130119.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00066161185123
                      EEETTTTEEESSHHHHHHHHHH..T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                      + C  C+k ++  ++++ H+++  H
  Lj0g3v0130119.1 161 FYCDLCNKQYKLAMEFEAHLSSydH 185
                      78*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004433.6E-1864109IPR000467G-patch domain
PROSITE profilePS5017416.88766111IPR000467G-patch domain
PfamPF015851.0E-1567107IPR000467G-patch domain
SuperFamilySSF576672.54E-5141196No hitNo description
PfamPF121711.7E-5161188IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDYRRSSGRQ ESGGRGRRQF KKEEAHQDSL IGDLAEDFRL PINHRPTENV DLENVEQASL  60
DTQLTSSNIG FKLLQKMGWK GKGLGKDEQG IIEPIKSGMR DPRLGLGKQE EDDFFTAEEN  120
IQRKKLDVEL EETEENVRKR EVLAEREQKI QTEVKEIRKV FYCDLCNKQY KLAMEFEAHL  180
SSYDHNHRKR FKQMKEMHGG SSRDDRQKRE QQRQEREIAK FAQIADAQKQ QRLQLLQESG  240
SEPVSSETRT ATPLTDQEQR NALKFGFSSK GSASKNVIGP KRQMVAKKQN IPVSSIFNND  300
SDEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0130119.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1475090.0BT147509.1 Lotus japonicus clone JCVI-FLLj-4O12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020213578.10.0G patch domain-containing protein 8
TrEMBLI3T4610.0I3T461_LOTJA; Uncharacterized protein
STRINGGLYMA03G38720.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59772428