PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0127459.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 22470.9 Da PI: 8.2115 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.4e-19 | 109 | 159 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ +r++lg+f+t+ +Aaka++ a+ +++g Lj0g3v0127459.1 109 RYRGVRRRP-WGKFAAEIRDPTRK--GTRVWLGTFDTEIDAAKAYDYAAFRMRG 159 7********.**********8542..4**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-23 | 109 | 169 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-34 | 109 | 173 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-13 | 109 | 159 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.882 | 109 | 167 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-31 | 109 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-13 | 110 | 121 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.09E-14 | 117 | 167 | No hit | No description |
PRINTS | PR00367 | 4.1E-13 | 149 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MTTSEEIYSL KFLSQHLLGD ISDSYLTNLI PVKLEDSSSE FDLDSLFSEQ SSFCTFLESF 60 SFQADTEVAM SHEAKNSITP THSGETQKSS SPEPEVSGKQ EQTCYQGRRY RGVRRRPWGK 120 FAAEIRDPTR KGTRVWLGTF DTEIDAAKAY DYAAFRMRGR KAILNFPLEA GKASPKPSNS 180 GRKRGREQRE SGTSSSHVMS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-29 | 106 | 168 | 2 | 64 | ATERF1 |
3gcc_A | 7e-29 | 106 | 168 | 2 | 64 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.9139 | 0.0 | floral bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0127459.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010527 | 0.0 | AP010527.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT135A04, TM1816, complete sequence. | |||
GenBank | AP010529 | 0.0 | AP010529.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT45M19, TM1126b, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028219549.1 | 2e-87 | ethylene-responsive transcription factor ERF107-like | ||||
TrEMBL | I3T6K8 | 1e-144 | I3T6K8_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA20G33800.1 | 1e-86 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 2e-33 | ERF family protein |