PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0114779.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ERF | ||||||||
Protein Properties | Length: 144aa MW: 16919.5 Da PI: 10.8574 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.4 | 5.7e-16 | 107 | 144 | 1 | 42 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeA 42 ++y+GVr++k +g+W+AeIrd + + +r +lg++ taeeA Lj0g3v0114779.1 107 CKYRGVRQRK-WGKWAAEIRDpF-----KgARLWLGTYNTAEEA 144 79*******9.**********55.....45*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 1.3E-30 | 6 | 144 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 1.83E-20 | 107 | 144 | No hit | No description |
Pfam | PF00847 | 3.3E-10 | 107 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.938 | 108 | 144 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-9 | 108 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-19 | 108 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.41E-14 | 108 | 144 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.9E-10 | 109 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-10 | 131 | 144 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MSKSRKQPAS RRLRPQPLPE FKMVRKLRVI YDDPYATESS DDEYYHSREK KPRKIKRCIT 60 EIPLPPLVPV IPEPSSFAEK KINNAVEVHN KKRVSTQNPS TRRQPSCKYR GVRQRKWGKW 120 AAEIRDPFKG ARLWLGTYNT AEEA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00217 | DAP | Transfer from AT1G68550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0114779.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009863 | 1e-161 | AP009863.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT13N05, TM1862b, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027365139.1 | 2e-46 | ethylene-responsive transcription factor ERF118-like | ||||
TrEMBL | B0BLJ1 | 2e-68 | B0BLJ1_LOTJA; CM0545.620.nc protein | ||||
STRING | XP_004497097.1 | 6e-41 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2690 | 34 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 3e-21 | ERF family protein |