PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0109229.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

G2-like

Protein Properties

Length: 375aa MW: 41292.9 Da PI: 8.1659

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0109229.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.9	2.2e-28	208	263	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++qLGG+++AtPk+i+e++kv+gLt +vkS LQk+Rl+ Lj0g3v0109229.1 208 KQRRCWSQELHKRFLHALQQLGGPDVATPKQIREHLKVDGLTTVEVKSYLQKFRLH 263 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-24	205	266	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.616	205	265	IPR017930	Myb domain
SuperFamily	SSF46689	3.85E-16	206	266	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.2E-23	208	263	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-7	210	260	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MLFSQKMQPH KMGSREYIQA LEEERKKIQV FPRELPLSLE LVTQAIEACR QQLSGTTTDY 60 NLNNGQSECS GQTSTEDGPV FEEFFPMKKR AAPDCDEKDE DDDDDELHSH KKKSDWLRSV 120 QLWNPNPSTT KEDLPRKTNV VEVKRNGGAF HPFHREESGV GKASNVVSAA CKAPSSPPVP 180 ATSSTGPVRV DSNDGGSKRD EKGQAQRKQR RCWSQELHKR FLHALQQLGG PDVATPKQIR 240 EHLKVDGLTT VEVKSYLQKF RLHTRRSPVI HNNANSQTTP LFLVGNIYVQ PSEYGAVATT 300 TTGSGELTKV TAPSGIYAPV AAHPPATAVM KSPQLKQLEV SSNSEERTNH SEGAVHSNSA 360 ASSSSTHSTT TSPRC

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MLFSQKMQPH KMGSREYIQA LEEERKKIQV FPRELPLSLE LVTQAIEACR QQLSGTTTDY  60
NLNNGQSECS GQTSTEDGPV FEEFFPMKKR AAPDCDEKDE DDDDDELHSH KKKSDWLRSV  120
QLWNPNPSTT KEDLPRKTNV VEVKRNGGAF HPFHREESGV GKASNVVSAA CKAPSSPPVP  180
ATSSTGPVRV DSNDGGSKRD EKGQAQRKQR RCWSQELHKR FLHALQQLGG PDVATPKQIR  240
EHLKVDGLTT VEVKSYLQKF RLHTRRSPVI HNNANSQTTP LFLVGNIYVQ PSEYGAVATT  300
TTGSGELTKV TAPSGIYAPV AAHPPATAVM KSPQLKQLEV SSNSEERTNH SEGAVHSNSA  360
ASSSSTHSTT TSPRC

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.10887	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0109229.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB353302	0.0	AB353302.1 Lotus japonicus MYB mRNA for MYB-type transcription factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027360963.1	1e-179	transcription factor HHO3-like
TrEMBL	D2KTV3	0.0	D2KTV3_LOTJA; MYB-type transcription factor
STRING	XP_007153350.1	1e-170	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3918	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68670.1	3e-71	G2-like family protein