PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0096239.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 272aa    MW: 29381.9 Da    PI: 5.0342
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0096239.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.5e-21100149255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a+++a+k+++g
  Lj0g3v0096239.1 100 VYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFPTAEEAARAYDEAAKRIRG 149
                      69*******.**********94....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-37100163IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-23100158IPR016177DNA-binding domain
PfamPF008477.7E-15100149IPR001471AP2/ERF domain
PROSITE profilePS5103224.513100157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-33100158IPR001471AP2/ERF domain
PRINTSPR003678.7E-12101112IPR001471AP2/ERF domain
CDDcd000181.32E-33101159No hitNo description
PRINTSPR003678.7E-12123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MCGGAIISDF IAVKRGRNLA PQEIWSELDP FSDFAAFDAA SAGAAVSTTP TSKSSSPPLN  60
FDDVIQVPDQ KVAGCDKKGE KKKSVVGSGG AGKKNARKNV YRGIRQRPWG KWAAEIRDPQ  120
KGVRVWLGTF PTAEEAARAY DEAAKRIRGD KAKLNFPDTV AAPPPTKKQR CLSPEQPEYS  180
SSGSSGPTTT TTGSSDSSAP IITTGLEDQP NLKLQISDIE WFLGLDNEPV QAQAQIQAQA  240
EPLPGGDAEW ESDFMDLWML DDVVMTNRHP VY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2396160166ATERF1
3gcc_A9e-2396160166ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.72480.0cell culture| floral bud| flower| pod| protoplast| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0096239.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7879690.0KC787969.1 Lotus corniculatus AP2/ERF (ERF055) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001243393.13e-83ethylene-responsive transcription factor RAP2-3-like
TrEMBLA0A140WWF21e-148A0A140WWF2_LOTCO; AP2/ERF
STRINGGLYMA09G04630.11e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-29ethylene-responsive element binding protein