PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0074119.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 27538.2 Da    PI: 8.8916
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0074119.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.91.3e-28959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     k+ien   rqvtfskRrng+lKKA ELSvLCdaevaviifsstgkly +s+
  Lj0g3v0074119.1  9 KKIENLNSRQVTFSKRRNGLLKKARELSVLCDAEVAVIIFSSTGKLYKFSN 59
                     68***********************************************95 PP
2K-box62.22e-218817315100
            K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      + +  + + L+++i +L++e+ ++lG++L+ Ls+ eL+qLe+qL ++l  +++kK+++l+eq+ +++ +e+++  en+aLrk+l+e
  Lj0g3v0074119.1  88 NVMVPDTNILNDQITQLRSENLRMLGKGLDGLSFSELHQLENQLTDGLCAVKDKKDKMLIEQLTRSRLQEEKALMENEALRKQLKE 173
                      556667889**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.562161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-31274IPR002100Transcription factor, MADS-box
CDDcd002655.33E-43276No hitNo description
PRINTSPR004042.3E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.87487177IPR002487Transcription factor, K-box
PfamPF014861.8E-1592171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGKIEIKK IENLNSRQVT FSKRRNGLLK KARELSVLCD AEVAVIIFSS TGKLYKFSNT  60
SMEHTLSRYG RGQGSHGAEQ PTDEPSTNVM VPDTNILNDQ ITQLRSENLR MLGKGLDGLS  120
FSELHQLENQ LTDGLCAVKD KKDKMLIEQL TRSRLQEEKA LMENEALRKQ LKEIENKRKT  180
QFLEFTSLDR TNSMSSSKPL LVCASEDNEI SDTSLQLGYS ADYGRKRKSV KTEPCNDSGS  240
QVASQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-21183183MEF2C
5f28_B2e-21183183MEF2C
5f28_C2e-21183183MEF2C
5f28_D2e-21183183MEF2C
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0074119.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150413e-58AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027364327.11e-131agamous-like MADS-box protein AGL18
TrEMBLA0A371H3T01e-129A0A371H3T0_MUCPR; Agamous-like MADS-box protein AGL18 (Fragment)
STRINGGLYMA02G33040.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.18e-64AGAMOUS-like 15