PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0055089.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Trihelix
Protein Properties Length: 595aa    MW: 69025.4 Da    PI: 5.9649
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0055089.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix575.1e-18105181286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      Wt++evlaL+++r++me+++ +       We+vs+k++e g++rs+++Ckek+e+  +++ +i+ ++k+   ++ ++++++++le
  Lj0g3v0055089.1 105 WTNDEVLALLRIRSSMESWFPEF-----TWEHVSRKLAEVGYKRSAEKCKEKFEEETRYFNNINYTNKS---TNINNYRFLTELE 181
                      ********************998.....9***************************************8...4677899999997 PP
2trihelix96.13.2e-30428514186
         trihelix   1 rWtkqevlaLiearremee.rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+k+evlaLi++r   ++ + ++g+ k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k++ +k++s +s+tcpyf+ql 
  Lj0g3v0055089.1 428 RWPKDEVLALINLRCTSNNnEDKEGNNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDNTSKKRSLDSRTCPYFHQLS 514
                      8*************86665055679************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071714101158IPR001005SANT/Myb domain
PfamPF138371.6E-11103182No hitNo description
PROSITE profilePS500906.586104156IPR017877Myb-like domain
SMARTSM007170.31425488IPR001005SANT/Myb domain
PfamPF138371.8E-19427515No hitNo description
CDDcd122034.83E-24427493No hitNo description
PROSITE profilePS500906.748428486IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MFDGVPDQFH QFITPRTSLP LHLPFPLHAS SAPNNNTTFP SFDPYNPSHH QLPFQPNLLH  60
HPLHHKDEEK EENNNTVQPN PMNFQIERDQ RQQLPQLQQQ QVDPWTNDEV LALLRIRSSM  120
ESWFPEFTWE HVSRKLAEVG YKRSAEKCKE KFEEETRYFN NINYTNKSTN INNYRFLTEL  180
EELYEEVGTE KSTTHQQQQQ QQDKMEERAA LDDQDHHDDS VDQTKQNKAQ SEEDQEKIMK  240
ERKRKRVDDR FEVFKGFCES VVNNMMARQE EMHRKIIEDM VRRDEEKFSK EEAWKKQEMD  300
KMNKELEMMA HEQAIAGDRQ ANIIQFLKNF EKSQRFGSGN GKEKLKVTSE DSSTLLSQNP  360
SPSPSSTLPT SCALVVAENP SSINLGQDTS SRVVVPFENP SSSLNPQETN SVLIHKGSTI  420
EKDDVGRRWP KDEVLALINL RCTSNNNEDK EGNNKAPLWE RISQGMLELG YKRSAKRCKE  480
KWENINKYFR KTKDNTSKKR SLDSRTCPYF HQLSNLYNQG KLVPQSERPE GKLNNAAANN  540
NAPDQITPQA ESSSTQVGSG CGNFTVQQQQ QQKVDDHEGE KTSMQQVPSL DFDQF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.198780.0floral bud| flower| pod
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0055089.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097680.0AP009768.1 Lotus japonicus genomic DNA, clone: LjT40E15, TM1928, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144820.10.0hypothetical protein PHAVU_007G186700g
TrEMBLV7BG150.0V7BG15_PHAVU; Uncharacterized protein
STRINGXP_007144820.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.14e-70Trihelix family protein