 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR12G15530.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
LSD |
| Protein Properties |
Length: 177aa MW: 18581.7 Da PI: 8.5504 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR12G15530.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 44.5 | 2.4e-14 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr++L YPrGApsV+Ca+C++V
LPERR12G15530.1 7 CHGCRNILLYPRGAPSVCCAICHAV 31
************************9 PP
|
| 2 | zf-LSD1 | 48.3 | 1.6e-15 | 47 | 71 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggCrtlL+Y+r+A+sVRC++CdtV
LPERR12G15530.1 47 CGGCRTLLMYTRNATSVRCSCCDTV 71
************************9 PP
|
| 3 | zf-LSD1 | 50.8 | 2.6e-16 | 85 | 109 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+C+t+L+YP+GApsV+Ca+C+++
LPERR12G15530.1 85 CGQCQTVLMYPYGAPSVKCAICNFI 109
***********************86 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000303 | Biological Process | response to superoxide |
| GO:0001666 | Biological Process | response to hypoxia |
| GO:0002240 | Biological Process | response to molecule of oomycetes origin |
| GO:0009626 | Biological Process | plant-type hypersensitive response |
| GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway |
| GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway |
| GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process |
| GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process |
| GO:0010618 | Biological Process | aerenchyma formation |
| GO:0043069 | Biological Process | negative regulation of programmed cell death |
| Sequence ? help Back to Top |
| Protein Sequence Length: 177 aa
Download sequence Send
to blast |
MQSQIVCHGC RNILLYPRGA PSVCCAICHA VTSTTPPPGM DIAHLICGGC RTLLMYTRNA 60
TSVRCSCCDT VNLVRPVSSI AHVNCGQCQT VLMYPYGAPS VKCAICNFIT NTGMNTMRPL 120
PPTVHAPNGT PYTVPSTSAP TAQSQNVTVV VENPMTVDAK GKLVSNVVVG VTTGGKK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK111837 | 0.0 | AK111837.1 Oryza sativa Japonica Group cDNA clone:J023139G05, full insert sequence. |
