PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G15010.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 325aa    MW: 34935.1 Da    PI: 7.7556
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G15010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.9e-12183229455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ahn  E+rRR +i +++ +L++l+P +      K + a++L ++++Y+k Lq
  LPERR12G15010.1 183 AHNLTEKRRRLKITERLRTLKRLVPGC-----DKTDQATTLDQTIQYMKLLQ 229
                      8*************************9.....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.574179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.33E-16180240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10183229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-15183235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-11183232No hitNo description
SMARTSM003538.9E-12185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MNGQDSAAAG FFTDNVDDSG KSAAIAAAAA ENEDFSDMLR DFDYSSDDLF ELMWQLGRAN  60
FEHGDGGRGA VADQPSTVSY HHLSQLPPET ITGDPIIAAP SEEEMAAWLC PIVSGDDSRQ  120
REDVDGRRAA PLPEKKSVGI DRQEAAPTTT NKDTASDDSG GRKNQASSSS GGTKTRSHHA  180
AGAHNLTEKR RRLKITERLR TLKRLVPGCD KTDQATTLDQ TIQYMKLLQH QVNTMPPPVY  240
PRYMTPPPQM VLAAAAGPPL PPPAAMVPFA RAMIPYPPYP AAVLLPPPPM YRPAATSASP  300
AAHRHGSGRS GRISKSSSST LRKKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G15010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9Y1540.0A0A0D9Y154_9ORYZ; Uncharacterized protein
STRINGLPERR12G15010.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-15phytochrome interacting factor 3-like 5