PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G10620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 230aa MW: 24405.8 Da PI: 8.8954 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.9 | 5.6e-06 | 107 | 149 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + r RR++i ++ +eL +l+P a + +s a++L A +Y+k L LPERR12G10620.1 107 AARERRRQISEKTAELSRLIPGgA-----RMNSTADMLYFARRYVKFL 149 6699******************55.....66***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.493 | 99 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-5 | 105 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.91E-6 | 105 | 153 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.1E-7 | 106 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.64E-9 | 106 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MSPTSAHQVF DRRRLLAVAA VNAGMGHADS AADALRPFTD EPAAAIDDLL APLPSGCRGA 60 GAAGERPAKR PRASAACDQT TPPPPRHWQV GPDLAAAAKG NKGGSAAARE RRRQISEKTA 120 ELSRLIPGGA RMNSTADMLY FARRYVKFLK AQVDILSLLP SSGEVAMPSM MTAEEQETMM 180 ALLASGRVQE RLAGEGKCIV PTSFVRAVAG DGDDVLNREL ARFINSLQEQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G10620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008650631.1 | 1e-34 | uncharacterized protein LOC103631513 | ||||
TrEMBL | A0A0D9XZI7 | 1e-165 | A0A0D9XZI7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G10620.1 | 1e-166 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6201 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 3e-17 | bHLH family protein |