PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G03080.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 496aa    MW: 53891.4 Da    PI: 6.9323
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G03080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.78e-11192218733
                      HHCHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   7 errkqkNReAArrsRqRKkaeieeLee 33 
                       rr+++NReAAr+sR+RKka+i++Le 
  LPERR12G03080.1 192 MRRLAQNREAARKSRLRKKAYIQQLES 218
                      69***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-5185261IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.128188232IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-6190226No hitNo description
PfamPF001701.4E-7191219IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.1E-7192233No hitNo description
PROSITE patternPS000360193208IPR004827Basic-leucine zipper domain
PfamPF141442.0E-29270344IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MGEAKSSTGQ NLHHVLGYGF HGTLTNSMPS ANLFEQGGGA ATYFGELEAA LAHQVDTLRR  60
AQQTAVNNNS SSTVHHGYTT PFSTAATATA TATATARTLD IFPSWPMSSL PTPKEGCSNV  120
TADTTDSESS SKNNSVQKAS SDHQHGAVAD MMKQFDQIPQ QQQQQHKVAQ NMAATSSTHS  180
DKMRKTLDPK IMRRLAQNRE AARKSRLRKK AYIQQLESSK LRLAQMEQDL ERARSQGLLL  240
GGSPGGNIST GAAMFDAEYG RWLEDGGQRM AELHGGLHAH LPDGDLRAIV DDALAHYDEL  300
FRFRAAAAKS DVFHLITGTW ATPAERCFLW MGGFRPSDLL KTVVPQLDPL TEQQVVGICS  360
LQQSSQQAEE ALSQGLEQLH QSLADTVANG SSMIDDANLG SFMGCMALAL GKLSNLEGFV  420
IQADNLRQQT LHQMHRILTI RQAARCFLAI GEYHNRLRAL SSLWASRPRE ILVAAEGNCG  480
EISIAAQPSD SQFSAF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G03080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016200.0AK101620.1 Oryza sativa Japonica Group cDNA clone:J033052J02, full insert sequence.
GenBankFJ7509290.0FJ750929.1 Oryza sativa clone KCS115G01 DNA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698654.10.0PREDICTED: transcription factor TGA6-like
RefseqXP_015698655.10.0PREDICTED: transcription factor TGA6-like
RefseqXP_015698656.10.0PREDICTED: transcription factor TGA6-like
RefseqXP_015698657.10.0PREDICTED: transcription factor TGA6-like
SwissprotQ2QXL00.0TGL11_ORYSJ; Transcription factor TGAL11
TrEMBLA0A0D9XX020.0A0A0D9XX02_9ORYZ; Uncharacterized protein
STRINGLPERR12G03080.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44443670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-134bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]