PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR11G11070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 224aa MW: 24052.2 Da PI: 9.5668 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108 | 4.6e-34 | 122 | 180 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ +v++tYeg+Hnh+ LPERR11G11070.1 122 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSRDEAIVVTTYEGTHNHP 180 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-35 | 107 | 180 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-30 | 114 | 181 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.974 | 117 | 182 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-40 | 122 | 181 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-27 | 123 | 180 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0010055 | Biological Process | atrichoblast differentiation | ||||
GO:0032107 | Biological Process | regulation of response to nutrient levels | ||||
GO:0043620 | Biological Process | regulation of DNA-templated transcription in response to stress | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MENFPILFAT QPSSSTSSSY HFMTSSGANS HGLQAGGNGG GGLSHGLFMG SSSSSKMEDF 60 SNSKDDATRS PHDSSAGDGA GDGDGLQVAG GSGGGGGGRK RGEKKERRPR FAFQTRSQVD 120 ILDDGYRWRK YGQKAVKNNK FPRSYYRCTH QGCNVKKQVQ RLSRDEAIVV TTYEGTHNHP 180 IEKSNDNFEH ILTQMHIYSG LNPSSAASSS TLFPSSAAAS HMFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-28 | 113 | 181 | 8 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 1e-28 | 113 | 181 | 8 | 76 | Probable WRKY transcription factor 4 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00506 | DAP | Transfer from AT5G13080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR11G11070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT828238 | 1e-140 | CT828238.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112H02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615223.1 | 1e-94 | probable WRKY transcription factor 56 | ||||
TrEMBL | A0A0D9XS70 | 1e-165 | A0A0D9XS70_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G11070.1 | 1e-165 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 7e-55 | WRKY DNA-binding protein 75 |