PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G02260.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 986aa    MW: 109674 Da    PI: 7.0182
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G02260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS243.11.1e-74204202374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                      v lL ecA +v++g++e+a+ + ++++ l   ++ p+qRl + ++  La+rl+ s ++l+ al  p +  e++ ++  aa+  f+++ P+l  +
  LPERR11G02260.1  20 VPLLHECASHVTEGSFEKADFTFKKIRMLTFIADGPLQRLSTIIVDSLAHRLLFSIQGLSGALiDPFDYIEQTIVQ--AARYNFFNLNPFLSTG 111
                      6789*******************************************************99886666665333333..34445*********** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      ++t N+aI+ea+e e+              W+ +lq +  Rp+gpp+l +T++++    ++e l +++  L+k Ae+l+vpf+f   v  rle+
  LPERR11G02260.1 112 FVTINRAIMEAMEDEK--------------WVKILQDFHGRPGGPPELYLTVLHD----DHEFLANMQTLLSKKAESLEVPFRFIS-VKGRLET 186
                      *************995..............99***********************....9**************************.688**** PP

             GRAS 189 leleeL....rvkpgEalaVnlvlqlhrll.........................................desvsleserdevLklvkslsPk 237
                      l+l++L    ++k g a+a++++lqlh+ll                                           s ++++   ++L++++ l+P+
  LPERR11G02260.1 187 LDLSNLrdtfQIKFGGAVAISCALQLHHLLlvddnlsstsiaqlqqmanftqlkqmastvcspastlnylqTPSPHTPKLLARLLSVIRALKPN 280
                      *****965555666*******************************************************98666777778889*********** PP

             GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                      ++v++eq+a+hn+  F +rf e l+yy+alfds++a ++++    +er  vEr++l++ei+n++ ceg +r erhe+l +W + +ee+GF++v+
  LPERR11G02260.1 281 IMVIMEQDANHNTLLFRDRFNEVLNYYAALFDSFHAVAAANPqrvDERLRVERMILREEIKNILVCEGVHRHERHERLDQWAMHMEESGFHNVQ 374
                      **********************************665443333669************************************************ PP

             GRAS 329 lsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ls +a  + k  l  ++ +  + +e++g+l+l+W + +L+s+SaWr
  LPERR11G02260.1 375 LSFSAIREGKENLLSFGLKDCQNKEDRGCLLLCWGSTNLYSISAWR 420
                      *****************777*************************8 PP
2GRAS346.15.7e-1065389731374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPi 90 
                      l++lL++c   v++g++ +a+ +L+++ +l+s d+  ++qRlaa+f+ ALa++l++ v++l++al +s++++++      ++aa++  +++ P+
  LPERR11G02260.1 538 LISLLYQCSAEVAAGSFDRANLCLEHITQLSSLDApHALQRLAAVFADALARKLLNLVPGLSRALLSSSSATNSadgAHLVTAARRHMFDALPF 631
                      5799*******************************9*****************************7666665554555566677788******* PP

             GRAS  91 lkfshltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                      lk+++lt+N+aIlea+ege+ vH++Df+  + +++QW+aL++a+  R+egpp+lRiT+v++    ske l +++  L+k Ae++++ f+fn++ 
  LPERR11G02260.1 632 LKLAYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIALFHAFCGRREGPPHLRITAVHE----SKEFLANMAAVLSKEAEAFDIAFQFNAVE 721
                      ***************************966899****************************....9**************************83 PP

             GRAS 183 ak..rledle..leeLrvkpgEalaVnlvlqlhrll.....................................................desvs 219
                      a+  +++d++   + L v++gEalaV++vlqlhrll                                                     + s++
  LPERR11G02260.1 722 ASldEMDDFDalRRVLGVRSGEALAVSVVLQLHRLLaaaddnnggarrhaltplqiiarssprsfgellerelntrlqlspdtsphsplATSTT 815
                      33224444431145679999*****************************************************************988766666 PP

             GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetl 312
                       ++   ++L+ v+slsPk++vv+eqea+hn+  F erf eal+yy++lfd+l+ + p+ s  er+ vEr+llg+ei+ vva egaerrerhe++
  LPERR11G02260.1 816 APK-LGSFLSSVRSLSPKIMVVTEQEASHNGVAFSERFDEALNYYASLFDCLQRS-PALSpAERARVERVLLGEEIRGVVAREGAERRERHERA 907
                      666.999**********************************************99.666669******************************** PP

             GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee...sgslvlgWkdrpLvsvSaWr 374
                      ++W +r+e+aG++ v +s++aa +a  ll+ +++ g y+v ++   +g ++++W+++pL++vSaWr
  LPERR11G02260.1 908 RQWAARMEAAGLERVGISYSAALEAGKLLQSCGWAGpYEVRHDaagHGFFFFCWHKKPLYAVSAWR 973
                      *********************************8888****8766678888**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.5111400IPR005202Transcription factor GRAS
PfamPF035143.9E-7220420IPR005202Transcription factor GRAS
PROSITE profilePS5098549.73512949IPR005202Transcription factor GRAS
PfamPF035142.0E-103538973IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 986 aa     Download sequence    Send to blast
MTHGLWAHHQ GSVDHLAQLV PLLHECASHV TEGSFEKADF TFKKIRMLTF IADGPLQRLS  60
TIIVDSLAHR LLFSIQGLSG ALIDPFDYIE QTIVQAARYN FFNLNPFLST GFVTINRAIM  120
EAMEDEKWVK ILQDFHGRPG GPPELYLTVL HDDHEFLANM QTLLSKKAES LEVPFRFISV  180
KGRLETLDLS NLRDTFQIKF GGAVAISCAL QLHHLLLVDD NLSSTSIAQL QQMANFTQLK  240
QMASTVCSPA STLNYLQTPS PHTPKLLARL LSVIRALKPN IMVIMEQDAN HNTLLFRDRF  300
NEVLNYYAAL FDSFHAVAAA NPQRVDERLR VERMILREEI KNILVCEGVH RHERHERLDQ  360
WAMHMEESGF HNVQLSFSAI REGKENLLSF GLKDCQNKED RGCLLLCWGS TNLYSISAWR  420
PNKGSASGSR EHMLVQRQIL WPAQICLAAQ GFVWTRNADF GAISAPFDPA FCSRLGAEEI  480
DPKIQLRLCC TNRSMFQDDM LSSATSSPAS SSVYSPSFSP SNGSWVQELS HDHQSVRLIS  540
LLYQCSAEVA AGSFDRANLC LEHITQLSSL DAPHALQRLA AVFADALARK LLNLVPGLSR  600
ALLSSSSATN SADGAHLVTA ARRHMFDALP FLKLAYLTTN HAILEAMEGE RFVHVVDFSG  660
PAANPVQWIA LFHAFCGRRE GPPHLRITAV HESKEFLANM AAVLSKEAEA FDIAFQFNAV  720
EASLDEMDDF DALRRVLGVR SGEALAVSVV LQLHRLLAAA DDNNGGARRH ALTPLQIIAR  780
SSPRSFGELL ERELNTRLQL SPDTSPHSPL ATSTTAPKLG SFLSSVRSLS PKIMVVTEQE  840
ASHNGVAFSE RFDEALNYYA SLFDCLQRSP ALSPAERARV ERVLLGEEIR GVVAREGAER  900
RERHERARQW AARMEAAGLE RVGISYSAAL EAGKLLQSCG WAGPYEVRHD AAGHGFFFFC  960
WHKKPLYAVS AWRPAATASC CRHTRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-3556897332375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G02260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2427940.0AK242794.1 Oryza sativa Japonica Group cDNA, clone: J090058A05, full insert sequence.
GenBankFQ3779470.0FQ377947.1 Oryza glaberrima chromosome 12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616660.10.0scarecrow-like protein 3 isoform X1
TrEMBLA0A0D9XNY40.0A0A0D9XNY4_9ORYZ; Uncharacterized protein
STRINGLPERR11G02260.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.16e-90scarecrow-like 3